Unverified Commit a12b1538 authored by Aleksana's avatar Aleksana Committed by GitHub
Browse files

Merge pull request #316782 from aaronjheng/poretools 

poretools: remove
parents 0ab9c9aa 8b4e9350

pkgs/applications/science/biology/poretools/default.nix

deleted100644 → 0
+0 −23
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{ lib, python2Packages, fetchFromGitHub }:



python2Packages.buildPythonPackage rec {

  pname = "poretools";

  version = "unstable-2016-07-10";



  src = fetchFromGitHub {

    repo = pname;

    owner = "arq5x";

    rev = "e426b1f09e86ac259a00c261c79df91510777407";

    sha256 = "0bglj833wxpp3cq430p1d3xp085ls221js2y90w7ir2x5ay8l7am";

  };



  propagatedBuildInputs = [ python2Packages.h5py python2Packages.matplotlib python2Packages.seaborn python2Packages.pandas ];



  meta = {

    description = "Toolkit for working with nanopore sequencing data from Oxford Nanopore";

    license = lib.licenses.mit;

    homepage = "https://poretools.readthedocs.io/en/latest/";

    maintainers = [ lib.maintainers.rybern ];

    broken = true; # Build error: h5py-3.9.0 not supported for interpreter python2.7

  };

}

pkgs/top-level/aliases.nix

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@@ -1030,6 +1030,7 @@ mapAliases ({ 
  pltScheme = racket; # just to be sure

  pmdk = throw "'pmdk' is discontinued, no further support or maintenance is planned by upstream"; # Added 2023-02-06

  pomotroid = throw "pomotroid has been removed from nixpkgs, because it depended on an insecure version of electron"; # Added 2023-09-12

  poretools = throw "poretools has been removed from nixpkgs, as it was broken and unmaintained"; # Added 2024-06-03

  powerdns = pdns; # Added 2022-03-28



  # postgresql plugins

pkgs/top-level/all-packages.nix

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@@ -11903,8 +11903,6 @@ with pkgs; 














  popfile = callPackage ../tools/text/popfile { };



























  poretools = callPackage ../applications/science/biology/poretools { };



























  porsmo = callPackage ../applications/misc/porsmo { };





























  pantum-driver = callPackage ../misc/drivers/pantum-driver { };