Merge pull request #222660 from natsukium/hh-suite/init

{ lib

, stdenv

, fetchFromGitHub

, cmake

, xxd

, enableMpi ? false

, mpi

, openmp

}:

stdenv.mkDerivation rec {

  pname = "hh-suite";

  version = "3.3.0";

  src = fetchFromGitHub {

    owner = "soedinglab";

    repo = "hh-suite";

    rev = "v${version}";

    hash = "sha256-kjNqJddioCZoh/cZL3YNplweIGopWIGzCYQOnKDqZmw=";

  };

  nativeBuildInputs = [ cmake xxd ];

  cmakeFlags = lib.optional stdenv.hostPlatform.isx86 "-DHAVE_SSE2=1"

    ++ lib.optional stdenv.hostPlatform.isAarch "-DHAVE_ARM8=1"

    ++ lib.optional stdenv.hostPlatform.avx2Support "-DHAVE_AVX2=1"

    ++ lib.optional stdenv.hostPlatform.sse4_1Support "-DHAVE_SSE4_1=1";

  buildInputs = lib.optional stdenv.cc.isClang openmp

    ++ lib.optional enableMpi mpi;

  meta = with lib; {

    description = "Remote protein homology detection suite";

    homepage = "https://github.com/soedinglab/hh-suite";

    license = licenses.gpl3Plus;

    maintainers = with maintainers; [ natsukium ];

    platforms = platforms.unix;

  };

}

  flywheel-cli = callPackage ../applications/science/biology/flywheel-cli { };

  hh-suite = callPackage ../applications/science/biology/hh-suite {

    inherit (llvmPackages) openmp;

  };

  hisat2 = callPackage ../applications/science/biology/hisat2 { };

  htslib = callPackage ../development/libraries/science/biology/htslib { };