Unverified Commit 950c66b7 authored by Sandro Jäckel's avatar Sandro Jäckel Committed by GitHub
Browse files

Merge pull request #284607 from dotlambda/deeptools-fix 

deeptools: fix build
parents bed63154 ac3e621e

pkgs/applications/science/biology/deeptools/default.nix

+28 −8
Original line number Diff line number Diff line 
{ lib, python, fetchFromGitHub }:

with python.pkgs;

buildPythonApplication rec {

  pname = "deepTools";

{ lib

, python3

, fetchFromGitHub

}:



python3.pkgs.buildPythonApplication rec {

  pname = "deeptools";

  version = "3.5.4";

  pyproject = true;



  src = fetchFromGitHub {

    owner = "deeptools";

    repo = "deepTools";

    rev = version;

    sha256 = "sha256-A8YdlMptmJyxWW0EYLjXFIWjIO/mttEC7VYdlCe9MaI=";

    hash = "sha256-A8YdlMptmJyxWW0EYLjXFIWjIO/mttEC7VYdlCe9MaI=";

  };



  format = "pyproject";

  nativeBuildInputs = with python3.pkgs; [

    setuptools

  ];



  propagatedBuildInputs = [

  propagatedBuildInputs = with python3.pkgs; [

    numpy

    numpydoc

    scipy
@@ -26,7 +32,21 @@ buildPythonApplication rec { 
    importlib-metadata

  ];



  nativeCheckInputs = [ pytest ];

  nativeCheckInputs = with python3.pkgs; [

    pytestCheckHook

  ];



  preCheck = ''

    export PATH="$out/bin:$PATH"

  '';



  disabledTestPaths = [

    # tests trip on `len(sys.argv) == 1`

    "deeptools/test/test_bigwigAverage.py"

    "deeptools/test/test_bigwigCompare_and_multiBigwigSummary.py"

    "deeptools/test/test_heatmapper.py"

    "deeptools/test/test_multiBamSummary.py"

  ];



  meta = with lib; {

    homepage = "https://deeptools.readthedocs.io/en/develop";

pkgs/top-level/all-packages.nix

+1 −1
Original line number Diff line number Diff line
@@ -38811,7 +38811,7 @@ with pkgs; 
    python3 = python311;

  };













  deeptools = callPackage ../applications/science/biology/deeptools { python = python3; };













  deeptools = callPackage ../applications/science/biology/deeptools { };





























  deep-translator = with python3Packages; toPythonApplication deep-translator;