Commit 937edb65 authored by Fabian Affolter's avatar Fabian Affolter Committed by github-actions[bot]
Browse files

python311Packages.phik: refactor, disable failing tests 

(cherry picked from commit fc1c549b)
parent b44ebb5f

pkgs/development/python-modules/phik/default.nix

+44 −24
Original line number Diff line number Diff line
@@ -2,27 +2,29 @@ 
, buildPythonPackage

, cmake

, fetchFromGitHub

, isPy3k

, pytestCheckHook

, nbconvert

, joblib

, jupyter

, jupyter-client

, numpy

, scipy

, pandas

, matplotlib

, nbconvert

, ninja

, numba

, numpy

, pandas

, pybind11

, pytestCheckHook

, pythonOlder

, scikit-build

, scipy

, setuptools

}:



buildPythonPackage rec {

  pname = "phik";

  version = "0.12.3";

  disabled = !isPy3k;

  format = "pyproject";

  pyproject = true;



  disabled = pythonOlder "3.7";



  src = fetchFromGitHub {

    owner = "KaveIO";
@@ -31,11 +33,11 @@ buildPythonPackage rec { 
    hash = "sha256-9o3EDhgmne2J1QfzjjNQc1mUcyCzoVrCnWXqjWkiZU0=";

  };



  nativeCheckInputs = [

    pytestCheckHook

    nbconvert

    jupyter

    jupyter-client

  nativeBuildInputs = [

    cmake

    ninja

    scikit-build

    setuptools

  ];



  propagatedBuildInputs = [
@@ -48,17 +50,20 @@ buildPythonPackage rec { 
    pybind11

  ];



  # uses setuptools to drive build process

  nativeCheckInputs = [

    pytestCheckHook

    nbconvert

    jupyter

    jupyter-client

  ];



  # Uses setuptools to drive build process

  dontUseCmakeConfigure = true;



  nativeBuildInputs = [

    cmake

    ninja

    scikit-build

  pythonImportsCheck = [

    "phik"

  ];



  pythonImportsCheck = [ "phik" ];



  postInstall = ''

    rm -r $out/bin

  '';
@@ -68,12 +73,27 @@ buildPythonPackage rec { 
    rm -r phik

  '';



  disabledTests = [

    # TypeError: 'numpy.float64' object cannot be interpreted as an integer

    # https://github.com/KaveIO/PhiK/issues/73

    "test_significance_matrix_hybrid"

    "test_significance_matrix_mc"

  ];



  disabledTestPaths = [

    # Don't test integrations

    "tests/phik_python/integration/"

  ];



  meta = with lib; {

    description = "Phi_K correlation analyzer library";

    longDescription = "Phi_K is a new and practical correlation coefficient based on several refinements to Pearson’s hypothesis test of independence of two variables.";

    homepage = "https://phik.readthedocs.io/en/latest/";

    changelog = "https://github.com/KaveIO/PhiK/blob/${src.rev}/CHANGES.rst";

    maintainers = with maintainers; [ melsigl ];

    longDescription = ''

      Phi_K is a new and practical correlation coefficient based on several refinements to

      Pearson’s hypothesis test of independence of two variables.

    '';

    homepage = "https://phik.readthedocs.io/";

    changelog = "https://github.com/KaveIO/PhiK/blob/${version}/CHANGES.rst";

    license = licenses.asl20;

    maintainers = with maintainers; [ melsigl ];

  };

}