samtools_0_1_19: drop (#405947)

diff --git a/Makefile b/Makefile

index 2f51bfc..395d6f1 100644

--- a/Makefile

+++ b/Makefile

@@ -1,7 +1,7 @@

 CC=			gcc

 CFLAGS=		-g -Wall -O2

 #LDFLAGS=		-Wl,-rpath,\$$ORIGIN/../lib

-DFLAGS=		-D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1

+DFLAGS=		-D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE # -D_CURSES_LIB=1

 KNETFILE_O=	knetfile.o

 LOBJS=		bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam.o bam_index.o	\

 			bam_pileup.o bam_lpileup.o bam_md.o razf.o faidx.o bedidx.o \

@@ -15,7 +15,7 @@ PROG=		samtools

 INCLUDES=	-I.

 SUBDIRS=	. bcftools misc

 LIBPATH=

-LIBCURSES=	-lcurses # -lXCurses

+LIBCURSES=	# -lcurses # -lXCurses

 .SUFFIXES:.c .o

 .PHONY: all lib

{

  lib,

  stdenv,

  fetchurl,

  zlib,

}:

stdenv.mkDerivation rec {

  pname = "samtools";

  version = "0.1.19";

  src = fetchurl {

    url = "mirror://sourceforge/samtools/${pname}-${version}.tar.bz2";

    sha256 = "d080c9d356e5f0ad334007e4461cbcee3c4ca97b8a7a5a48c44883cf9dee63d4";

  };

  patches = [

    ./samtools-0.1.19-no-curses.patch

  ];

  buildInputs = [ zlib ];

  installPhase = ''

    mkdir -p $out/bin

    mkdir -p $out/share/man

    cp samtools $out/bin

    cp samtools.1 $out/share/man

  '';

  meta = with lib; {

    description = "Tools for manipulating SAM/BAM/CRAM format";

    mainProgram = "samtools";

    license = licenses.mit;

    homepage = "https://samtools.sourceforge.net/";

    platforms = platforms.unix;

    maintainers = [ maintainers.unode ];

  };

}

  s2n = throw "'s2n' has been renamed to/replaced by 's2n-tls'"; # Converted to throw 2024-10-17

  sandboxfs = throw "'sandboxfs' has been removed due to being unmaintained, consider using linux namespaces for sandboxing instead"; # Added 2024-06-06

  sane-backends-git = throw "'sane-backends-git' has been renamed to/replaced by 'sane-backends'"; # Converted to throw 2024-10-17

  samtools_0_1_19 = throw "'samtools_0_1_19' has been removed because it is unmaintained. Consider using 'samtools' instead"; # Added 2025-05-10

  scantailor = scantailor-advanced; # Added 2022-05-26

  schildichat-web = throw ''

    schildichat has been removed as it is severely lacking behind the Element upstream and does not receive regular security fixes.

  raxml-mpi = raxml.override { useMpi = true; };

  samtools = callPackage ../applications/science/biology/samtools { };

  samtools_0_1_19 = callPackage ../applications/science/biology/samtools/samtools_0_1_19.nix {

    stdenv = gccStdenv;

  };

  inherit (callPackages ../applications/science/biology/sumatools { })

    sumalibs