Unverified Commit 8aca5a49 authored by Nick Cao's avatar Nick Cao Committed by GitHub
Browse files

python312Packages.neurokit2: fix (#382454)

parents 95a8839f c1c622a8

pkgs/development/python-modules/neurokit2/default.nix

+33 −23
Original line number Diff line number Diff line 
{

  lib,

  stdenv,

  fetchFromGitHub,

  buildPythonPackage,

  fetchFromGitHub,



  # build-system

  setuptools,

  pytest,

  scipy,

  scikit-learn,

  pandas,



  # dependencies

  matplotlib,

  numpy,

  pandas,

  requests,

  cvxopt,

  biosppy,

  pytest-cov-stub,

  mock,

  plotly,

  scikit-learn,

  scipy,



  # tests

  astropy,

  coverage,

  mock,

  plotly,

  pytest-cov-stub,

  pytestCheckHook,

}:
@@ -34,22 +38,20 @@ buildPythonPackage rec { 


  postPatch = ''

    substituteInPlace setup.py \

      --replace-fail '"pytest-runner"' '"pytest"'

      --replace-fail '"pytest-runner", ' ""

  '';



  build-system = [

    setuptools

    pytest

  ];



  dependencies = [

    scipy

    scikit-learn

    pandas

    matplotlib

    numpy

    pandas

    requests

    cvxopt

    biosppy

    scikit-learn

    scipy

  ];



  nativeCheckInputs = [
@@ -68,25 +70,33 @@ buildPythonPackage rec { 


  disabledTestPaths = [

    # Required dependencies not available in nixpkgs

    "tests/tests_complexity.py"

    "tests/tests_eeg.py"

    "tests/tests_eog.py"

    "tests/tests_ecg.py"

    "tests/tests_bio.py"

    "tests/tests_complexity.py"

    "tests/tests_data.py"

    "tests/tests_epochs.py"

    "tests/tests_ecg.py"

    "tests/tests_ecg_delineate.py"

    "tests/tests_ecg_findpeaks.py"

    "tests/tests_eda.py"

    "tests/tests_eeg.py"

    "tests/tests_emg.py"

    "tests/tests_eog.py"

    "tests/tests_epochs.py"

    "tests/tests_hrv.py"

    "tests/tests_rsp.py"

    "tests/tests_ppg.py"

    "tests/tests_rsp.py"

    "tests/tests_signal.py"



    # Dependency is broken `mne-python`

    "tests/tests_microstates.py"

  ];



  pytestFlagsArray = [

    # Otherwise, test collection fails with:

    # AttributeError: module 'scipy.ndimage._delegators' has no attribute '@py_builtins_signature'. Did you mean: 'grey_dilation_signature'?

    # https://github.com/scipy/scipy/issues/22236

    "--assert=plain"

  ];



  pythonImportsCheck = [

    "neurokit2"

  ];