Merge pull request #210392 from bcdarwin/update-elastix

{ lib, stdenv, fetchFromGitHub, fetchpatch, cmake, itk_5_2, python3, Cocoa }:

{ lib, stdenv, fetchFromGitHub, cmake, itk, Cocoa }:

stdenv.mkDerivation rec {

  pname    = "elastix";

  version = "5.0.1";

  version = "5.1.0";

  src = fetchFromGitHub {

    owner = "SuperElastix";

    repo = pname;

    rev = version;

    sha256 = "1mx8kkak2d3ibfrxrh8jkmh2zkdlgl9h578wiw3617zcwaa97bxw";

    hash = "sha256-wFeLU8IwiF43a9TAvecQG+QMw88PQZdJ8sI1Zz3ZeXc=";

  };

  patches = [

    (fetchpatch {

      name = "install-executables.patch";  # https://github.com/SuperElastix/elastix/issues/305

      url = "https://github.com/SuperElastix/elastix/commit/8e26cdc0d66f6030c7be085fdc424d84d4fc7546.patch";

      sha256 = "12y9wbpi9jlarnw6fk4iby97jxvx5g4daq9zqblbcmn51r134bj5";

    })

  ];

  nativeBuildInputs = [ cmake python3 ];

  buildInputs = [ itk_5_2 ] ++ lib.optionals stdenv.isDarwin [ Cocoa ];

  nativeBuildInputs = [ cmake ];

  buildInputs = [ itk ] ++ lib.optionals stdenv.isDarwin [ Cocoa ];

  doCheck = !stdenv.isDarwin;  # usual dynamic linker issues