bioawk: init at unstable-2017-09-11

{ lib

, stdenv

, fetchFromGitHub

, installShellFiles

, bison

, zlib

}:

stdenv.mkDerivation {

  pname = "bioawk";

  version = "unstable-2017-09-11";

  src = fetchFromGitHub {

    owner = "lh3";

    repo = "bioawk";

    rev = "fd40150b7c557da45e781a999d372abbc634cc21";

    hash = "sha256-WWgz96DPP83J45isWkMbgEvOlibq6WefK//ImV6+AU0=";

  };

  nativeBuildInputs = [

    bison

    installShellFiles

  ];

  buildInputs = [

    zlib

  ];

  buildFlags = [

    "CC=${stdenv.cc.targetPrefix}cc"

  ];

  installPhase = ''

    runHook preInstall

    install -Dm755 bioawk -t $out/bin

    mv awk.1 bioawk.1

    installManPage bioawk.1

    runHook postInstall

  '';

  meta = with lib; {

    description = "BWK awk modified for biological data";

    homepage = "https://github.com/lh3/bioawk";

    license = licenses.hpnd;

    maintainers = with maintainers; [ natsukium ];

    platforms = platforms.unix;

  };

}

  bftools = callPackage ../applications/science/biology/bftools { };

  bioawk = callPackage ../applications/science/biology/bioawk { };

  blast = callPackage ../applications/science/biology/blast {

    inherit (darwin.apple_sdk.frameworks) ApplicationServices;

  };