Unverified Commit 7cf2cecb authored by Sandro Jäckel's avatar Sandro Jäckel Committed by GitHub
Browse files

python313Packages.pysam: 0.22.1-unstable-2024-10-30 -> 0.23.3 (#438849)

parents 597c7a90 8500e522

pkgs/development/python-modules/pysam/default.nix

+14 −6
Original line number Diff line number Diff line
@@ -13,11 +13,12 @@ 
  setuptools,

  samtools,

  zlib,

  nix-update-script,

}:



buildPythonPackage {

buildPythonPackage rec {

  pname = "pysam";

  version = "0.22.1-unstable-2024-10-30";

  version = "0.23.3";

  pyproject = true;



  # Fetching from GitHub instead of PyPi cause the 0.13 src release on PyPi is
@@ -26,16 +27,19 @@ buildPythonPackage { 
  src = fetchFromGitHub {

    owner = "pysam-developers";

    repo = "pysam";

    rev = "0eae5be21ac3ab3ac7aa770a3931e2977e37b909";

    hash = "sha256-i8glYSpuCRNhNtK4i6eUrerz8daiMfY/YgDwgSuELbc=";

    tag = "v${version}";

    hash = "sha256-yOLnfuGQW+j0nHy4MRlwurZMpeRHTGmQ9eLmihcAGoQ=";

  };



  nativeBuildInputs = [

  build-system = [

    cython

    samtools

    setuptools

  ];



  nativeBuildInputs = [

    samtools

  ];



  buildInputs = [

    bzip2

    curl
@@ -73,11 +77,15 @@ buildPythonPackage { 
    "pysam.libchtslib"

    "pysam.libcutils"

    "pysam.libcvcf"

    "pysam.libcsamtools"

  ];



  passthru.updateScript = nix-update-script { };



  meta = {

    description = "Python module for reading, manipulating and writing genome data sets";

    downloadPage = "https://github.com/pysam-developers/pysam";

    changelog = "https://github.com/pysam-developers/pysam/releases/tag/${src.tag}";

    homepage = "https://pysam.readthedocs.io";

    maintainers = with lib.maintainers; [ unode ];

    license = lib.licenses.mit;