python311Packages.niworkflows: init at 1.10.0

{ lib

, buildPythonPackage

, fetchFromGitHub

, hatch-vcs

, hatchling

, pytestCheckHook

, attrs

, importlib-resources

, jinja2

, looseversion

, matplotlib

, nibabel

, nilearn

, nipype

, nitransforms

, numpy

, packaging

, pandas

, pybids

, pyyaml

, scikit-image

, scipy

, seaborn

, svgutils

, templateflow

, traits

, transforms3d

}:

buildPythonPackage rec {

  pname = "niworkflows";

  version = "1.10.0";

  pyproject = true;

  src = fetchFromGitHub {

    owner = "nipreps";

    repo = "niworkflows";

    rev = "refs/tags/${version}";

    hash = "sha256-wQPk9imDvomg+NTWk+VeW1TE2QlvMyi1YYVVaznhktU=";

  };

  postPatch = ''

    substituteInPlace pyproject.toml --replace '"traits < 6.4"' '"traits"'

  '';

  nativeBuildInputs = [

    hatch-vcs

    hatchling

  ];

  propagatedBuildInputs = [

    attrs

    importlib-resources

    jinja2

    looseversion

    matplotlib

    nibabel

    nilearn

    nipype

    nitransforms

    numpy

    packaging

    pandas

    pybids

    pyyaml

    scikit-image

    scipy

    seaborn

    svgutils

    templateflow

    traits

    transforms3d

  ];

  env.SETUPTOOLS_SCM_PRETEND_VERSION = version;

  nativeCheckInputs = [ pytestCheckHook ];

  preCheck = ''export HOME=$(mktemp -d)'';

  pytestFlagsArray = [ "niworkflows" ];

  # try to download data:

  disabledTests = [

    "test_GenerateCifti"

    "ROIsPlot"

    "ROIsPlot2"

    "test_SimpleShowMaskRPT"

    "test_cifti_surfaces_plot"

    "niworkflows.utils.misc.get_template_specs"

    "niworkflows.interfaces.cifti._prepare_cifti"

  ];

  disabledTestPaths = [ "niworkflows/tests/test_registration.py" ];

  pythonImportsCheck = [ "niworkflows" ];

  meta = with lib; {

    description = "Common workflows for MRI (anatomical, functional, diffusion, etc.)";

    homepage = "https://github.com/nipreps/niworkflows";

    changelog = "https://github.com/nipreps/niworkflows/blob/${src.rev}/CHANGES.rst";

    license = licenses.asl20;

    maintainers = with maintainers; [ bcdarwin ];

  };

}

  nitransforms = callPackage ../development/python-modules/nitransforms { };

  niworkflows = callPackage ../development/python-modules/niworkflows { };

  nix-kernel = callPackage ../development/python-modules/nix-kernel {

    inherit (pkgs) nix;

  };