Unverified Commit 735b011a authored by t4ccer's avatar t4ccer
Browse files

sratoolkit: 3.3.0 -> 3.4.1

parent cbbdcad5

pkgs/by-name/nc/ncbi-vdb/package.nix

+2 −2
Original line number Diff line number Diff line
@@ -12,13 +12,13 @@ 


stdenv.mkDerivation (finalAttrs: {

  pname = "ncbi-vdb";

  version = "3.3.0";

  version = "3.4.1";



  src = fetchFromGitHub {

    owner = "ncbi";

    repo = "ncbi-vdb";

    tag = finalAttrs.version;

    hash = "sha256-bYVwgNYnFg2OPaPWSbXIW+VXprxg/PxwHIRCnDfQRls=";

    hash = "sha256-A6Pjy1dEkCHy1B6LrWwVs8Et41POvdK4Upsyp4JUnaU=";

  };



  nativeBuildInputs = [

pkgs/by-name/sr/sratoolkit/attribute_unused.patch

deleted100644 → 0
+0 −14
Original line number Diff line number Diff line 
diff --git a/libs/kxml/xml.c b/libs/kxml/xml.c

index ce445424..41e21612 100644

--- a/libs/kxml/xml.c

+++ b/libs/kxml/xml.c

@@ -46,6 +46,9 @@ struct s_KNodeNamelist;

 #include <assert.h>

 #include <string.h>

 

+#ifndef ATTRIBUTE_UNUSED

+#define ATTRIBUTE_UNUSED

+#endif

 

 #define XML_DEBUG(msg) DBGMSG (DBG_XML, DBG_FLAG(DBG_XML_XML), msg)

pkgs/by-name/sr/sratoolkit/package.nix

+2 −4
Original line number Diff line number Diff line
@@ -16,17 +16,15 @@ stdenv.mkDerivation (finalAttrs: { 
  pname = "sratoolkit";



  # NOTE: When updating make sure to update ncbi-vdb as well for versions to match

  version = "3.3.0";

  version = "3.4.1";



  src = fetchFromGitHub {

    owner = "ncbi";

    repo = "sra-tools";

    tag = finalAttrs.version;

    hash = "sha256-Lv4EWAKJ6F5uvsXgo2Bx3JyY9lYaL1El9Jbi2LidmHo=";

    hash = "sha256-JMdJ8F4n9WgdP2oj8MN1+QlxCSmqFzsjAovx/+RyVjk=";

  };



  patches = [ ./attribute_unused.patch ];



  cmakeFlags = [

    "-DVDB_INCDIR=${ncbi-vdb}/include"

    "-DVDB_LIBDIR=${ncbi-vdb}/lib"