Commit 6e99fa33 authored by R. RyanTM's avatar R. RyanTM Committed by Alexis Praga
Browse files

rtg-tools: 3.12.1 -> 3.13 

Fix jdk path.
parent 6ed432a9

pkgs/by-name/rt/rtg-tools/package.nix

+3 −4
Original line number Diff line number Diff line
@@ -13,13 +13,13 @@ 


stdenv.mkDerivation rec {

  pname = "rtg-tools";

  version = "3.12.1";

  version = "3.13";



  src = fetchFromGitHub {

    owner = "RealTimeGenomics";

    repo = "rtg-tools";

    rev = version;

    hash = "sha256-fMrrjrgaGxBVxn6qMq2g0oFv6qtfhZcQlkvv1E9Os6Y=";

    hash = "sha256-vPzKrgnX6BCQmn9aOVWWpFLC6SbPBHZhZ+oL1LCbvmo=";

  };



  nativeBuildInputs = [
@@ -47,12 +47,11 @@ stdenv.mkDerivation rec { 
    # Use a location outside nix (must be writable)

    substituteInPlace installer/rtg \

      --replace-fail  '$THIS_DIR/rtg.cfg' '$HOME/.config/rtg-tools/rtg.cfg'  \

      --replace-fail 'RTG_JAVA="java"' 'RTG_JAVA="${jdk}/lib/opendk/bin/java"' \

       --replace-fail 'RTG_JAVA="java"' 'RTG_JAVA="${lib.getExe jdk}"' \

      --replace-fail uname ${lib.getExe' coreutils "uname"} \

      --replace-fail awk ${lib.getExe gawk} \

      --replace-fail "hostname -s" "${lib.getExe hostname} -s"





    sed -i '/USER_JAVA_OPTS=$RTG_JAVA_OPTS/a mkdir -p $HOME/.config/rtg-tools'  installer/rtg

  '';