python3Packages.bambi: 0.16.0 -> 0.17.2 (#480728) (692780dd) · Commits · nix / nixpkgs

pkgs/development/python-modules/arviz-base/default.nix

0 → 100644

+120 −0

Original line number	Diff line number	Diff line
		{
		lib,
		buildPythonPackage,
		fetchFromGitHub,

		# build-system
		flit-core,

		# dependencies
		numpy,
		typing-extensions,
		xarray,

		# optional-dependencies
		black,
		build,
		isort,
		mypy,
		pre-commit,
		cloudpickle,
		h5netcdf,
		jupyter-sphinx,
		myst-nb,
		myst-parser,
		numpydoc,
		sphinx,
		sphinx-book-theme,
		sphinx-copybutton,
		sphinx-design,
		netcdf4,
		pytest,
		pytest-cov,
		scipy,
		zarr,

		# tests
		pytestCheckHook,
		writableTmpDirAsHomeHook,
		}:

		buildPythonPackage (finalAttrs: {
		pname = "arviz-base";
		version = "0.8.2";
		pyproject = true;

		src = fetchFromGitHub {
		owner = "arviz-devs";
		repo = "arviz-base";
		tag = "v${finalAttrs.version}";
		hash = "sha256-g2DmhYqO9dgvDZwAXXSDFn5wHU0BvxXNgOzk6mmEmsw=";
		};

		build-system = [
		flit-core
		];

		dependencies = [
		numpy
		typing-extensions
		xarray
		];

		optional-dependencies = {
		check = [
		black
		build
		# docstub
		isort
		mypy
		pre-commit
		];
		ci = [
		cloudpickle
		pre-commit
		];
		doc = [
		h5netcdf
		jupyter-sphinx
		myst-nb
		myst-parser
		numpydoc
		sphinx
		sphinx-book-theme
		sphinx-copybutton
		sphinx-design
		];
		h5netcdf = [
		h5netcdf
		];
		netcdf4 = [
		netcdf4
		];
		test = [
		pytest
		pytest-cov
		scipy
		xarray
		];
		zarr = [
		zarr
		];
		};

		pythonImportsCheck = [ "arviz_base" ];

		nativeCheckInputs = [
		h5netcdf
		netcdf4
		pytestCheckHook
		writableTmpDirAsHomeHook
		];

		meta = {
		description = "Base ArviZ features and converters";
		homepage = "https://github.com/arviz-devs/arviz-base";
		changelog = "https://github.com/arviz-devs/arviz-base/blob/${finalAttrs.src.tag}/CHANGELOG.md";
		license = lib.licenses.asl20;
		maintainers = with lib.maintainers; [ GaetanLepage ];
		};
		})

pkgs/development/python-modules/arviz-plots/default.nix

0 → 100644

+121 −0

Original line number	Diff line number	Diff line
		{
		lib,
		stdenv,
		buildPythonPackage,
		fetchFromGitHub,

		# build-system
		flit-core,

		# dependencies
		arviz-base,
		arviz-stats,

		# optional-dependencies
		# bokeh
		bokeh,
		# doc
		h5netcdf,
		jupyter-sphinx,
		myst-nb,
		myst-parser,
		numpydoc,
		plotly,
		sphinx,
		sphinx-book-theme,
		sphinx-copybutton,
		sphinx-design,
		# matplotlib
		matplotlib,
		# plotly
		webcolors,
		# test
		hypothesis,
		kaleido,
		pytest,
		pytest-cov,

		# tests
		pytestCheckHook,
		}:

		buildPythonPackage (finalAttrs: {
		pname = "arviz-plots";
		version = "0.8.0";
		pyproject = true;

		src = fetchFromGitHub {
		owner = "arviz-devs";
		repo = "arviz-plots";
		tag = "v${finalAttrs.version}";
		hash = "sha256-x4UoUSKz+MAI082afnGhfoy2ad/hPK89Y1B2oEnxhsg=";
		};

		build-system = [
		flit-core
		];

		dependencies = [
		arviz-base
		arviz-stats
		]
		# Otherwise, import fails with "ModuleNotFoundError: No module named 'xarray_einstats'"
		++ arviz-stats.optional-dependencies.xarray;

		optional-dependencies = {
		bokeh = [
		bokeh
		];
		doc = [
		h5netcdf
		jupyter-sphinx
		myst-nb
		myst-parser
		numpydoc
		plotly
		sphinx
		sphinx-book-theme
		sphinx-copybutton
		sphinx-design
		];
		matplotlib = [
		matplotlib
		];
		plotly = [
		plotly
		webcolors
		];
		test = [
		h5netcdf
		hypothesis
		kaleido
		pytest
		pytest-cov
		];
		};

		pythonImportsCheck = [ "arviz_plots" ];

		env = lib.optionalAttrs stdenv.hostPlatform.isDarwin {
		# Prevents 'Fatal Python error: Aborted' on darwin during checkPhase
		MPLBACKEND = "Agg";
		};

		nativeCheckInputs = [
		bokeh
		h5netcdf
		hypothesis
		matplotlib
		plotly
		pytestCheckHook
		webcolors
		];

		meta = {
		description = "ArviZ modular plotting";
		homepage = "https://github.com/arviz-devs/arviz-plots";
		changelog = "https://github.com/arviz-devs/arviz-plots/blob/${finalAttrs.src.tag}/CHANGELOG.md";
		license = lib.licenses.asl20;
		maintainers = with lib.maintainers; [ GaetanLepage ];
		};
		})

pkgs/development/python-modules/arviz-stats/default.nix

0 → 100644

+106 −0

Original line number	Diff line number	Diff line
		{
		lib,
		buildPythonPackage,
		fetchFromGitHub,

		# build-system
		flit-core,

		# dependencies
		numpy,
		scipy,

		# optional-dependencies
		# doc
		h5netcdf,
		jupyter-sphinx,
		myst-nb,
		myst-parser,
		numpydoc,
		sphinx,
		sphinx-book-theme,
		sphinx-copybutton,
		sphinx-design,
		# numba
		numba,
		xarray-einstats,
		# test
		pytest,
		pytest-cov,

		# xarray
		arviz-base,
		xarray,

		# tests
		pytestCheckHook,
		}:

		buildPythonPackage (finalAttrs: {
		pname = "arviz-stats";
		version = "0.8.0";
		pyproject = true;

		src = fetchFromGitHub {
		owner = "arviz-devs";
		repo = "arviz-stats";
		tag = "v${finalAttrs.version}";
		hash = "sha256-FAZXnKxNb/DPkcpIRJRIzSbthS8Djf75hd5WMxegdhY=";
		};

		build-system = [
		flit-core
		];

		dependencies = [
		numpy
		scipy
		];

		optional-dependencies = {
		doc = [
		h5netcdf
		jupyter-sphinx
		myst-nb
		myst-parser
		numpydoc
		sphinx
		# sphinx-autosummary-accessors
		sphinx-book-theme
		sphinx-copybutton
		sphinx-design
		];
		numba = [
		numba
		xarray-einstats
		];
		test = [
		pytest
		pytest-cov
		];
		test-xarray = [
		h5netcdf
		pytest
		pytest-cov
		];
		xarray = [
		arviz-base
		xarray
		xarray-einstats
		];
		};

		pythonImportsCheck = [ "arviz_stats" ];

		nativeCheckInputs = [
		pytestCheckHook
		];

		meta = {
		description = "Statistical computation and diagnostics for ArviZ";
		homepage = "https://github.com/arviz-devs/arviz-stats";
		changelog = "https://github.com/arviz-devs/arviz-stats/blob/${finalAttrs.src.tag}/CHANGELOG.md";
		license = lib.licenses.asl20;
		maintainers = with lib.maintainers; [ GaetanLepage ];
		};
		})

pkgs/development/python-modules/arviz/default.nix

+7 −7

Original line number	Diff line number	Diff line
		@@ -39,16 +39,16 @@
		zarr,
		}:

		buildPythonPackage rec {
		buildPythonPackage (finalAttrs: {
		pname = "arviz";
		version = "0.23.0";
		version = "0.23.1";
		pyproject = true;

		src = fetchFromGitHub {
		owner = "arviz-devs";
		repo = "arviz";
		tag = "v${version}";
		hash = "sha256-/Xz4hTKB1lh9cxHkVXAZY8NsZoqdadukI/V1/LRZu24=";
		tag = "v${finalAttrs.version}";
		hash = "sha256-twAYCH8jsOnXVD3+sstOLEGG1Enbq8M8ZQWffFVzS48=";
		};

		nativeBuildInputs = [
		@@ -65,6 +65,7 @@ buildPythonPackage rec {

		dependencies = [
		h5netcdf
		h5py
		matplotlib
		numpy
		pandas
		@@ -79,7 +80,6 @@ buildPythonPackage rec {
		cloudpickle
		emcee
		ffmpeg
		h5py
		jax
		jaxlib
		numba
		@@ -124,8 +124,8 @@ buildPythonPackage rec {
		meta = {
		description = "Library for exploratory analysis of Bayesian models";
		homepage = "https://arviz-devs.github.io/arviz/";
		changelog = "https://github.com/arviz-devs/arviz/blob/v${version}/CHANGELOG.md";
		changelog = "https://github.com/arviz-devs/arviz/blob/${finalAttrs.src.tag}/CHANGELOG.md";
		license = lib.licenses.asl20;
		maintainers = with lib.maintainers; [ omnipotententity ];
		};
		}
		})

pkgs/development/python-modules/bambi/default.nix

+12 −8

Original line number	Diff line number	Diff line
		@@ -9,11 +9,13 @@
		setuptools-scm,

		# dependencies
		arviz,
		arviz-plots,
		formulae,
		graphviz,
		matplotlib,
		pandas,
		pymc,
		sparse,

		# tests
		blackjax,
		@@ -22,16 +24,16 @@
		writableTmpDirAsHomeHook,
		}:

		buildPythonPackage rec {
		buildPythonPackage (finalAttrs: {
		pname = "bambi";
		version = "0.16.0";
		version = "0.17.2";
		pyproject = true;

		src = fetchFromGitHub {
		owner = "bambinos";
		repo = "bambi";
		tag = version;
		hash = "sha256-EKcURfC4IpLGzr5ibzVlUnRHIhwPP+kYYusW9Mk8R/s=";
		tag = finalAttrs.version;
		hash = "sha256-Vjv62cYDIuTLE7MxRt4Havy7DMOiMTyIixbs4LGFGGs=";
		};

		build-system = [
		@@ -40,11 +42,13 @@ buildPythonPackage rec {
		];

		dependencies = [
		arviz
		arviz-plots
		formulae
		graphviz
		matplotlib
		pandas
		pymc
		sparse
		];

		optional-dependencies = {
		@@ -124,8 +128,8 @@ buildPythonPackage rec {
		meta = {
		description = "High-level Bayesian model-building interface";
		homepage = "https://bambinos.github.io/bambi";
		changelog = "https://github.com/bambinos/bambi/releases/tag/${src.tag}";
		changelog = "https://github.com/bambinos/bambi/releases/tag/${finalAttrs.src.tag}";
		license = lib.licenses.mit;
		maintainers = with lib.maintainers; [ bcdarwin ];
		};
		}
		})

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