Commit 67a6eb4d authored by Gaetan Lepage's avatar Gaetan Lepage
Browse files

python312Packages.devito: 4.8.12 -> 4.8.14 

Diff: https://github.com/devitocodes/devito/compare/refs/tags/v4.8.12...v4.8.14

Changelog: https://github.com/devitocodes/devito/releases/tag/v4.8.14
parent dc18c6f8

pkgs/development/python-modules/devito/default.nix

+52 −47
Original line number Diff line number Diff line
@@ -9,17 +9,16 @@ 


  # dependencies

  anytree,

  cached-property,

  cgen,

  click,

  cloudpickle,

  codepy,

  distributed,

  llvmPackages,

  multidict,

  nbval,

  numpy,

  packaging,

  psutil,

  py-cpuinfo,

  scipy,

  sympy,



  # tests
@@ -27,18 +26,19 @@ 
  matplotlib,

  pytest-xdist,

  pytestCheckHook,

  scipy,

}:



buildPythonPackage rec {

  pname = "devito";

  version = "4.8.12";

  version = "4.8.14";

  pyproject = true;



  src = fetchFromGitHub {

    owner = "devitocodes";

    repo = "devito";

    tag = "v${version}";

    hash = "sha256-Eqyq96mVB5ZhPaLASesWhzjjHcXz/tAIOPP//8yGoBM=";

    hash = "sha256-NM60H8Fx0pe4JEF7K8A+1i1MbxKhgab5cGcCD8wl9l8=";

  };



  pythonRemoveDeps = [ "pip" ];
@@ -49,16 +49,15 @@ buildPythonPackage rec { 


  dependencies = [

    anytree

    cached-property

    cgen

    click

    cloudpickle

    codepy

    distributed

    nbval

    multidict

    numpy

    packaging

    psutil

    py-cpuinfo

    scipy

    sympy

  ] ++ lib.optionals stdenv.cc.isClang [ llvmPackages.openmp ];
@@ -67,36 +66,45 @@ buildPythonPackage rec { 
    matplotlib

    pytest-xdist

    pytestCheckHook

    scipy

  ];



  pytestFlagsArray = [ "-x" ];

  pytestFlagsArray =

    [

      "-x"

      # Tests marked as 'parallel' require mpi and fail in the sandbox:

      # FileNotFoundError: [Errno 2] No such file or directory: 'mpiexec'

      "-m 'not parallel'"

    ]

    ++ lib.optionals (stdenv.hostPlatform.isLinux && stdenv.hostPlatform.isAarch64) [

      # assert np.all(f.data == check)

      # assert Data(False)

      "--deselect tests/test_data.py::TestDataReference::test_w_data"



      # AssertionError: assert 'omp for schedule(dynamic,1)' == 'omp for coll...le(dynamic,1)'

      "--deselect tests/test_dle.py::TestNestedParallelism::test_nested_cache_blocking_structure_subdims"



      # codepy.CompileError: module compilation failed

      # FAILED compiler invocation

      "--deselect tests/test_dle.py::TestNodeParallelism::test_dynamic_nthreads"



      # AssertionError: assert all(not i.pragmas for i in iters[2:])

      "--deselect tests/test_dle.py::TestNodeParallelism::test_incr_perfect_sparse_outer"

    ]

    ++ lib.optionals stdenv.hostPlatform.isDarwin [

      # IndexError: tuple index out of range

      "--deselect tests/test_dle.py::TestNestedParallelism"



      # codepy.CompileError: module compilation failed

      "--deselect tests/test_autotuner.py::test_nested_nthreads"



      # assert np.all(np.isclose(f0.data, check0))

      # assert Data(false)

      "--deselect tests/test_interpolation.py::TestSubDomainInterpolation::test_inject_subdomain"

    ];



  # I've had to disable the following tests since they fail while using nix-build, but they do pass

  # outside the build. They mostly related to the usage of MPI in a sandboxed environment.

  disabledTests =

    [

      "test_assign_parallel"

      "test_cache_blocking_structure_distributed"

      "test_codegen_quality0"

      "test_coefficients_w_xreplace"

      "test_docstrings"

      "test_docstrings[finite_differences.coefficients]"

      "test_gs_parallel"

      "test_if_halo_mpi"

      "test_if_parallel"

      "test_index_derivative"

      "test_init_omp_env_w_mpi"

      "test_loop_bounds_forward"

      "test_min_max_mpi"

      "test_mpi"

      "test_mpi_nocomms"

      "test_new_distributor"

      "test_setupWOverQ"

      "test_shortcuts"

      "test_stability_mpi"

      "test_subdomainset_mpi"

      "test_subdomains_mpi"



      # Download dataset from the internet

      "test_gs_2d_float"

      "test_gs_2d_int"
@@ -111,6 +119,9 @@ buildPythonPackage rec { 


      # FAILED tests/test_unexpansion.py::Test2Pass::test_v0 - codepy.CompileError: module compilation failed

      "test_v0"



      # AssertionError: assert(np.allclose(grad_u.data, grad_v.data, rtol=tolerance, atol=tolerance))

      "test_gradient_equivalence"

    ]

    ++ lib.optionals (stdenv.hostPlatform.isDarwin && stdenv.hostPlatform.isAarch64) [

      # Numerical tests
@@ -123,18 +134,12 @@ buildPythonPackage rec { 
    ];



  disabledTestPaths =

    lib.optionals

      ((stdenv.hostPlatform.isLinux && stdenv.hostPlatform.isAarch64) || stdenv.hostPlatform.isDarwin)

      [

      "tests/test_pickle.py"

      "tests/test_benchmark.py"

      "tests/test_mpi.py"

      "tests/test_autotuner.py"

      "tests/test_data.py"

        # Flaky: codepy.CompileError: module compilation failed

        "tests/test_dse.py"

      "tests/test_gradient.py"

    ]

    ++ lib.optionals (

      (stdenv.hostPlatform.isLinux && stdenv.hostPlatform.isAarch64) || stdenv.hostPlatform.isDarwin

    ) [ "tests/test_dle.py" ];

      ];



  pythonImportsCheck = [ "devito" ];