cwltool: 3.1.20240708091337 -> 3.1.20241024121129

{ lib

, fetchFromGitHub

, git

, nodejs

, python3

{

  lib,

  fetchFromGitHub,

  git,

  nodejs,

  python3,

}:

python3.pkgs.buildPythonApplication rec {

  pname = "cwltool";

  version = "3.1.20240708091337";

  version = "3.1.20241024121129";

  pyproject = true;

  src = fetchFromGitHub {

    owner = "common-workflow-language";

    repo = "cwltool";

    rev = "refs/tags/${version}";

    hash = "sha256-Umxh8sRBy7fC6+GrcN1q4iO0KVpmUhGPtnqZZK/6c9M=";

    hash = "sha256-MocgfELgis9b+byeDU7mDQcXnLhaWBtvGbqm7MtRdf8=";

  };

  postPatch = ''

    substituteInPlace setup.py \

      --replace "ruamel.yaml >= 0.16, < 0.19" "ruamel.yaml" \

      --replace "prov == 1.5.1" "prov" \

      --replace '"schema-salad >= 8.4.20230426093816, < 9",' "" \

      --replace "PYTEST_RUNNER + " ""

      --replace-fail "ruamel.yaml >= 0.16, < 0.19" "ruamel.yaml" \

      --replace-fail "prov == 1.5.1" "prov" \

      --replace-fail '"schema-salad >= 8.7, < 9",' '"schema-salad",' \

      --replace-fail "PYTEST_RUNNER + " ""

    substituteInPlace pyproject.toml \

      --replace "ruamel.yaml>=0.16.0,<0.18" "ruamel.yaml" \

      --replace "mypy==1.10.0" "mypy==1.10.*"

      --replace-fail "ruamel.yaml>=0.16.0,<0.18" "ruamel.yaml" \

      --replace-fail "mypy==1.13.0" "mypy"

  '';

  nativeBuildInputs = [

  nativeBuildInputs =

    [

      git

  ] ++ (with python3.pkgs; [

    ]

    ++ (with python3.pkgs; [

      setuptools

      setuptools-scm

    ]);

  propagatedBuildInputs = with python3.pkgs; [

  dependencies = with python3.pkgs; [

    argcomplete

    bagit

    coloredlogs

  meta = with lib; {

    description = "Common Workflow Language reference implementation";

    mainProgram = "cwltool";

    homepage = "https://www.commonwl.org";

    changelog = "https://github.com/common-workflow-language/cwltool/releases/tag/${version}";

    license = with licenses; [ asl20 ];

    maintainers = with maintainers; [ veprbl ];

    mainProgram = "cwltool";

  };

}