Unverified Commit 5a279778 authored by Robert Scott's avatar Robert Scott Committed by GitHub
Browse files

Merge pull request #314886 from bcdarwin/update-python3-pyxnat 

python312Packages.pyxnat: 1.6 -> 1.6.2
parents ab9a7c1e 609f2019

pkgs/development/python-modules/pyxnat/default.nix

+20 −12
Original line number Diff line number Diff line
@@ -9,13 +9,14 @@ 
  networkx,

  pandas,

  requests,

  six,

  setuptools,

}:



buildPythonPackage rec {

  pname = "pyxnat";

  version = "1.6";

  format = "setuptools";

  version = "1.6.2";

  pyproject = true;



  disabled = pythonOlder "3.8";



  # PyPI dist missing test configuration files:
@@ -23,21 +24,19 @@ buildPythonPackage rec { 
    owner = "pyxnat";

    repo = "pyxnat";

    rev = "refs/tags/${version}";

    hash = "sha256-QejYisvQFN7CsDOx9wAgTHmRZcSEqgIr8twG4XucfZ4=";

    hash = "sha256-21nTIYbIYlFWNJTxqsuijamqRunpdc7/VBawvrWadWI=";

  };



  build-system = [ setuptools ];



  propagatedBuildInputs = [

    lxml

    requests

    six

  ];



  # future is not used, and pathlib is installed part of python38+

  # w/o an external package

  # pathlib is installed part of python38+ w/o an external package

  prePatch = ''

    substituteInPlace setup.py \

      --replace "pathlib>=1.0" "" \

      --replace "future>=0.16" ""

    substituteInPlace setup.py --replace-fail "pathlib>=1.0" ""

    sed -i '/--cov/d' setup.cfg

  '';
@@ -52,15 +51,24 @@ buildPythonPackage rec { 
  '';

  pytestFlagsArray = [ "pyxnat" ];

  disabledTestPaths = [

    # try to access network even though PYXNAT_SKIP_NETWORK_TESTS is set:

    # require a running local XNAT instance e.g. in a docker container:

    "pyxnat/tests/attributes_test.py"

    "pyxnat/tests/custom_variables_test.py"

    "pyxnat/tests/interfaces_test.py"

    "pyxnat/tests/pipelines_test.py"

    "pyxnat/tests/provenance_test.py"

    "pyxnat/tests/prearchive_test.py"

    "pyxnat/tests/repr_test.py"

    "pyxnat/tests/resources_test.py"

    "pyxnat/tests/search_test.py"

    "pyxnat/tests/sessionmirror_test.py"

    "pyxnat/tests/test_resource_functions.py"

    "pyxnat/tests/user_and_project_management_test.py"

  ];

  disabledTests = [

    # try to access network even though PYXNAT_SKIP_NETWORK_TESTS is set:

    "test_ashs_volumes"

    "test_inspector_structure"

    "test_project_manager"

  ];



  pythonImportsCheck = [ "pyxnat" ];