Commit 4fa3c00d authored by Gaetan Lepage's avatar Gaetan Lepage
Browse files

python3Packages.scanpy: 1.12.0 -> 1.12.1 

Diff: https://github.com/scverse/scanpy/compare/1.12.0...1.12.1

Changelog: https://github.com/scverse/scanpy/releases/tag/1.12.1
parent 6da079cb

pkgs/development/python-modules/scanpy/default.nix

+11 −5
Original line number Diff line number Diff line
@@ -2,6 +2,7 @@ 
  lib,

  buildPythonPackage,

  fetchFromGitHub,

  pythonOlder,



  # build-system

  hatch-vcs,
@@ -9,6 +10,7 @@ 


  # dependencies

  anndata,

  certifi,

  fast-array-utils,

  h5py,

  joblib,
@@ -28,8 +30,9 @@ 
  session-info2,

  statsmodels,

  tqdm,

  typing-extensions,

  umap-learn,

  # python<3.13 only:

  typing-extensions,



  # optional-attrs

  # dask
@@ -60,14 +63,14 @@ 


buildPythonPackage (finalAttrs: {

  pname = "scanpy";

  version = "1.12.0";

  version = "1.12.1";

  pyproject = true;



  src = fetchFromGitHub {

    owner = "scverse";

    repo = "scanpy";

    tag = finalAttrs.version;

    hash = "sha256-jpi3SyTaG5mxCqUNSM564MMIrNdz4LBYo9+dn5nYmeY=";

    hash = "sha256-r8kicjCFyEKLxQtFYuZg0NKK7gRBoaLSSFGWqcQtBqM=";

  };



  # Otherwise, several tests fail to be collected:
@@ -86,6 +89,7 @@ buildPythonPackage (finalAttrs: { 


  dependencies = [

    anndata

    certifi

    fast-array-utils

    h5py

    joblib
@@ -105,11 +109,13 @@ buildPythonPackage (finalAttrs: { 
    session-info2

    statsmodels

    tqdm

    typing-extensions

    umap-learn

  ]

  ++ fast-array-utils.optional-dependencies.accel

  ++ fast-array-utils.optional-dependencies.sparse;

  ++ fast-array-utils.optional-dependencies.sparse

  ++ lib.optionals (pythonOlder "3.13") [

    typing-extensions

  ];



  optional-dependencies = {

    # commented attributes are due to some dependencies not being in Nixpkgs