platypus: drop (#391652)

{

  lib,

  stdenv,

  fetchFromGitHub,

  python27,

  htslib,

  zlib,

  makeWrapper,

}:

let

  python = python27.withPackages (ps: with ps; [ cython ]);

in

stdenv.mkDerivation {

  pname = "platypus-unstable";

  version = "2018-07-22";

  src = fetchFromGitHub {

    owner = "andyrimmer";

    repo = "Platypus";

    rev = "3e72641c69800da0cd4906b090298e654d316ee1";

    sha256 = "0nah6r54b8xm778gqyb8b7rsd76z8ji4g73sm6rvpw5s96iib1vw";

  };

  nativeBuildInputs = [ makeWrapper ];

  buildInputs = [

    htslib

    python

    zlib

  ];

  buildPhase = ''

    patchShebangs .

    make

  '';

  installPhase = ''

    mkdir -p $out/libexec/platypus

    cp -r ./* $out/libexec/platypus

    mkdir -p $out/bin

    makeWrapper ${python}/bin/python $out/bin/platypus --add-flags "$out/libexec/platypus/bin/Platypus.py"

  '';

  meta = with lib; {

    description = "Platypus variant caller";

    license = licenses.gpl3;

    homepage = "https://github.com/andyrimmer/Platypus";

    maintainers = with maintainers; [ jbedo ];

    platforms = platforms.x86_64;

  };

}

  pio = throw "pio has been removed due to lack of upstream maintenance"; # Added 2025-01-25

  pipewire_0_2 = throw "pipewire_0_2 has been removed as it is outdated and no longer used"; # Added 2024-07-28

  pipewire-media-session = throw "pipewire-media-session is no longer maintained and has been removed. Please use Wireplumber instead.";

  platypus = throw "platypus is unmaintained and has not merged Python3 support"; # Added 2025-03-20

  pleroma-otp = throw "'pleroma-otp' has been renamed to/replaced by 'pleroma'"; # Converted to throw 2024-10-17

  plots = throw "'plots' has been replaced by 'gnome-graphs'"; # Added 2025-02-05

  pltScheme = racket; # just to be sure