datalad: add python tests, use new PEP builder (47b4b80c) · Commits · nix / nixpkgs

pkgs/applications/version-management/datalad/default.nix

+110 −22

Original line number	Diff line number	Diff line
		{ lib, stdenv, fetchFromGitHub, installShellFiles, python3, git, git-annex }:
		{ lib, stdenv, fetchFromGitHub, installShellFiles, python3, git, git-annex, p7zip, curl, coreutils }:

		python3.pkgs.buildPythonApplication rec {
		pname = "datalad";
		@@ -11,9 +11,16 @@ python3.pkgs.buildPythonApplication rec {
		hash = "sha256-Vw/RpMf+jnUijJ3GZ9nLk1IRWOADmM+jNtYl5Ba6uLg=";
		};

		postPatch = ''
		substituteInPlace datalad/distribution/create_sibling.py \
		--replace-fail "/bin/ls" "${coreutils}/bin/ls"
		'';

		nativeBuildInputs = [ installShellFiles git ];

		propagatedBuildInputs = with python3.pkgs; [
		build-system = [ python3.pkgs.setuptools ];

		dependencies = with python3.pkgs; [
		# core
		platformdirs
		chardet
		@@ -45,25 +52,14 @@ python3.pkgs.buildPythonApplication rec {
		argcomplete
		pyperclip
		python-dateutil

		# metadata
		simplejson
		whoosh

		# metadata-extra
		pyyaml
		mutagen
		exifread
		python-xmp-toolkit
		pillow

		# duecredit
		duecredit

		# python>=3.8
		distro
		] ++ lib.optionals stdenv.hostPlatform.isWindows [ colorama ]
		++ lib.optionals (python3.pythonOlder "3.10") [ importlib-metadata ];
		++ lib.optionals (python3.pythonOlder "3.9") [ importlib-resources ]
		++ lib.optionals (python3.pythonOlder "3.10") [ importlib-metadata ]
		++ lib.optionals (python3.pythonOlder "3.11") [ typing_extensions ];

		postInstall = ''
		installShellCompletion --cmd datalad \
		@@ -72,15 +68,107 @@ python3.pkgs.buildPythonApplication rec {
		wrapProgram $out/bin/datalad --prefix PYTHONPATH : "$PYTHONPATH"
		'';

		# no tests
		doCheck = false;
		preCheck = ''
		export HOME=$TMPDIR
		'';

		# tests depend on apps in $PATH which only will get installed after the test
		disabledTests = [
		# No such file or directory: 'datalad'
		"test_script_shims"
		"test_cfg_override"
		"test_completion"
		"test_nested_pushclone_cycle_allplatforms"
		"test_create_sub_gh3463"
		"test_create_sub_dataset_dot_no_path"
		"test_cfg_passthrough"
		"test_addurls_stdin_input_command_line"
		"test_run_datalad_help"
		"test_status_custom_summary_no_repeats"
		"test_quoting"

		# No such file or directory: 'git-annex-remote-[...]"
		"test_create"
		"test_ensure_datalad_remote_maybe_enable"

		# "git-annex: unable to use external special remote git-annex-remote-datalad"
		"test_ria_postclonecfg"
		"test_ria_postclone_noannex"
		"test_ria_push"
		"test_basic_scenario"
		"test_annex_get_from_subdir"
		"test_ensure_datalad_remote_init_and_enable_needed"
		"test_ensure_datalad_remote_maybe_enable[False]"
		"test_ensure_datalad_remote_maybe_enable[True]"
		"test_create_simple"
		"test_create_alias"
		"test_storage_only"
		"test_initremote"
		"test_read_access"
		"test_ephemeral"
		"test_initremote_basic_fileurl"
		"test_initremote_basic_httpurl"
		"test_remote_layout"
		"test_version_check"
		"test_gitannex_local"
		"test_push_url"
		"test_url_keys"
		"test_obtain_permission_root"
		"test_source_candidate_subdataset"
		"test_update_fetch_all"
		"test_add_archive_dirs"
		"test_add_archive_content"
		"test_add_archive_content_strip_leading"
		"test_add_archive_content_zip"
		"test_add_archive_content_absolute_path"
		"test_add_archive_use_archive_dir"
		"test_add_archive_single_file"
		"test_add_delete"
		"test_add_archive_leading_dir"
		"test_add_delete_after_and_drop"
		"test_add_delete_after_and_drop_subdir"
		"test_override_existing_under_git"
		"test_copy_file_datalad_specialremote"
		"test_download_url_archive"
		"test_download_url_archive_from_subdir"
		"test_download_url_archive_trailing_separator"
		"test_download_url_need_datalad_remote"
		"test_datalad_credential_helper - assert False"

		# need internet access
		"test_clone_crcns"
		"test_clone_datasets_root"
		"test_reckless"
		"test_autoenabled_remote_msg"
		"test_ria_http_storedataladorg"
		"test_gin_cloning"
		"test_nonuniform_adjusted_subdataset"
		"test_install_datasets_root"
		"test_install_simple_local"
		"test_install_dataset_from_just_source"
		"test_install_dataset_from_just_source_via_path"
		"test_datasets_datalad_org"
		"test_get_cached_dataset"
		"test_cached_dataset"
		"test_cached_url"
		"test_anonymous_s3"
		"test_protocols"
		"test_get_versioned_url_anon"
		"test_install_recursive_github"
		"test_failed_install_multiple"

		# pbcopy not found
		"test_wtf"
		];

		nativeCheckInputs = [ p7zip python3.pkgs.pytestCheckHook git-annex curl python3.pkgs.httpretty ];

		pythonImportsCheck = [ "datalad" ];

		meta = with lib; {
		meta = {
		description = "Keep code, data, containers under control with git and git-annex";
		homepage = "https://www.datalad.org";
		license = licenses.mit;
		maintainers = with maintainers; [ renesat ];
		license = lib.licenses.mit;
		maintainers = with lib.maintainers; [ renesat ];
		};
		}
		No newline at end of file