Unverified Commit 47799668 authored by natsukium's avatar natsukium
Browse files

mmseqs2: add passthru.tests

parent c84109b0

pkgs/by-name/mm/mmseqs2/package.nix

+9 −0
Original line number Diff line number Diff line
@@ -17,6 +17,7 @@ 
  zlib,

  bzip2,

  pkgsStatic,

  runCommand,

}:

let

  # require static library, libzstd.a
@@ -76,6 +77,14 @@ stdenv.mkDerivation (finalAttrs: { 
    rm -r $out/util/

  '';



  passthru.tests = {

    example = runCommand "mmseqs2-test" { } ''

      ${lib.getExe finalAttrs.finalPackage} createdb ${finalAttrs.src}/examples/DB.fasta targetDB > $out

      ${lib.getExe finalAttrs.finalPackage} createindex targetDB tmp >> $out

      ${lib.getExe finalAttrs.finalPackage} easy-search ${finalAttrs.src}/examples/QUERY.fasta targetDB alnRes.m8 tmp >> $out

    '';

  };



  meta = with lib; {

    description = "Ultra fast and sensitive sequence search and clustering suite";

    mainProgram = "mmseqs";