Unverified Commit 42fabad0 authored by Justin Bedő's avatar Justin Bedő Committed by GitHub
Browse files

R updates (#500546)

parents 8af6a246 22d68fee

pkgs/applications/science/math/R/default.nix

+2 −2
Original line number Diff line number Diff line
@@ -46,7 +46,7 @@ assert (!blas.isILP64) && (!lapack.isILP64); 


stdenv.mkDerivation (finalAttrs: {

  pname = "R";

  version = "4.5.2";

  version = "4.5.3";



  src =

    let
@@ -54,7 +54,7 @@ stdenv.mkDerivation (finalAttrs: { 
    in

    fetchurl {

      url = "https://cran.r-project.org/src/base/R-${lib.versions.major version}/${pname}-${version}.tar.gz";

      hash = "sha256-DXH/cQbsac18Z+HpXtGjzuNViAkx8ut4xTABSp43nyA=";

      hash = "sha256-qlwe1Ck8cnGsUT1lRnA1asDopq1eQr4BQ2XREVC1uPI=";

    };



  outputs = [

pkgs/development/r-modules/bioc-annotation-packages.json

+4 −4
Original line number Diff line number Diff line
@@ -1031,14 +1031,14 @@ 
    },

    "IlluminaHumanMethylationEPICv2anno_20a1_hg38": {

      "name": "IlluminaHumanMethylationEPICv2anno.20a1.hg38",

      "version": "1.0.0",

      "sha256": "0vp4m3a7qal4d8qc9xaj7z3x484i33ix4c67qlbw0kskdir7rq5a",

      "version": "1.0.1",

      "sha256": "18y92h02dh3pcc27dn1m9jr4m6srwv7w25a4wg3c6jlrggnm5210",

      "depends": ["minfi"]

    },

    "IlluminaHumanMethylationEPICv2manifest": {

      "name": "IlluminaHumanMethylationEPICv2manifest",

      "version": "1.0.0",

      "sha256": "1z4b15x8cai27cqhl2lhl02nx0lv8q5c1774vdvvdajx2hivn77l",

      "version": "1.0.1",

      "sha256": "0dwynwhjf3dnbw6975fxvncrqk5si22vrcyf6wivvgak1zim9bjl",

      "depends": ["minfi"]

    },

    "IlluminaHumanMethylationMSAanno_ilm10a1_hg38": {

pkgs/development/r-modules/bioc-experiment-packages.json

+4 −4
Original line number Diff line number Diff line
@@ -113,8 +113,8 @@ 
    },

    "BloodCancerMultiOmics2017": {

      "name": "BloodCancerMultiOmics2017",

      "version": "1.30.0",

      "sha256": "095vzj9g8sj3zlkvc44938i6xi3c7q95080z9ygknmqczczr11b4",

      "version": "1.30.1",

      "sha256": "1dq7d4k8zwbgk6nyqfvicqy33f86rkygmhn3jjrv25nfasj9jifr",

      "depends": ["Biobase", "DESeq2", "RColorBrewer", "SummarizedExperiment", "beeswarm", "devtools", "dplyr", "ggdendro", "ggplot2", "glmnet", "gtable", "ipflasso", "reshape2", "scales", "survival", "tibble"]

    },

    "CCl4": {
@@ -2489,8 +2489,8 @@ 
    },

    "systemPipeRdata": {

      "name": "systemPipeRdata",

      "version": "2.14.4",

      "sha256": "1jl65qpwp4mk3zc10w28ksaivki8cw06mlx8bfbkwqsd6canwn3a",

      "version": "2.14.6",

      "sha256": "1j7h40hcm0gyahmlilvlb83ddmwrarqn319qwpnrgwcji8fm92jd",

      "depends": ["BiocGenerics", "Biostrings", "jsonlite", "remotes"]

    },

    "tartare": {

pkgs/development/r-modules/bioc-packages.json

+197 −203

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pkgs/development/r-modules/cran-packages.json

+5614 −3705

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