Commit 3b03a8d3 authored by annalee's avatar annalee Committed by github-actions[bot]
Browse files

python311Packages.pot: pypi missing files, switch to github; fixbuild 

pypi source is missing tests/conftest.py which is causing the tests to
with missing attribute errors

(cherry picked from commit 7d835a1d)
parent 48579be8

pkgs/development/python-modules/pot/default.nix

+17 −21
Original line number Diff line number Diff line 
{ lib

, autograd

, buildPythonPackage

, fetchFromGitHub

, cupy

, cvxopt

, cython

, fetchPypi

, oldest-supported-numpy

, matplotlib

, numpy

, tensorflow
@@ -20,19 +21,20 @@ 
buildPythonPackage rec {

  pname = "pot";

  version = "0.9.1";

  format = "setuptools";

  pyproject = true;



  disabled = pythonOlder "3.6";



  src = fetchPypi {

    pname = "POT";

    inherit version;

    hash = "sha256-gcJTJ6ABl/8Rwf5SIc8YGtHf/mFWRBUuLhFd3d9eWRs=";

  src = fetchFromGitHub {

    owner = "PythonOT";

    repo = "POT";

    rev = version;

    hash = "sha256-D61/dqO16VvcQx4FG1beKR4y1OQHndwCizaugNaUe4g=";

  };



  nativeBuildInputs = [

    numpy

    cython

    oldest-supported-numpy

  ];



  propagatedBuildInputs = [
@@ -59,17 +61,19 @@ buildPythonPackage rec { 
      --replace " --cov-report= --cov=ot" "" \

      --replace " --durations=20" "" \

      --replace " --junit-xml=junit-results.xml" ""

    substituteInPlace setup.py \

      --replace '"oldest-supported-numpy", ' ""



    # we don't need setup.py to find the macos sdk for us

    sed -i '/sdk_path/d' setup.py

  '';



  # To prevent importing of an incomplete package from the build directory

  # instead of nix store (`ot` is the top-level package name).

  # need to run the tests with the built package next to the test directory

  preCheck = ''

    rm -r ot

    pushd build/lib.*

    ln -s -t . "$OLDPWD/test"

  '';



  postCheck = ''

    popd

  '';



  disabledTests = [
@@ -100,15 +104,7 @@ buildPythonPackage rec { 
    "test_emd1d_device_tf"

  ];



  disabledTestPaths = [

    # AttributeError: module pytest has no attribute skip_backend

    "test/test_bregman.py"

    "test/test_da.py"

    "test/test_utils.py"

    "test/test_gromov.py"

    "test/test_helpers.py"

    "test/test_unbalanced.py"

  ] ++ lib.optionals (!enableDimensionalityReduction) [

  disabledTestPaths = lib.optionals (!enableDimensionalityReduction) [

    "test/test_dr.py"

  ];