Commit 38e335db authored by Xiangyan Sun's avatar Xiangyan Sun
Browse files

bio-gappa: fix build with gcc15

parent f97e1952

pkgs/by-name/bi/bio-gappa/fix-cstdint.patch

0 → 100644
+12 −0
Original line number Diff line number Diff line 
diff --git a/libs/CLI11/include/CLI/Validators.hpp b/libs/CLI11/include/CLI/Validators.hpp

index 536f8a6..3371905 100644

--- a/libs/CLI11/include/CLI/Validators.hpp

+++ b/libs/CLI11/include/CLI/Validators.hpp

@@ -18,6 +18,7 @@

 // Could be swapped for filesystem in C++17

 #include <sys/stat.h>

 #include <sys/types.h>

+#include <cstdint>

 

 namespace CLI {

pkgs/by-name/bi/bio-gappa/package.nix

+8 −2
Original line number Diff line number Diff line
@@ -8,6 +8,7 @@ 
  libz,

  bzip2,

  xz,

  versionCheckHook,

}:



stdenv.mkDerivation (finalAttrs: {
@@ -34,8 +35,10 @@ stdenv.mkDerivation (finalAttrs: { 
    xz

  ];



  # CMake 2.8.7 is deprecated and is no longer supported by CMake > 4

  # https://github.com/NixOS/nixpkgs/issues/445447

  patches = [

    ./fix-cstdint.patch

  ];



  postPatch = ''

    substituteInPlace CMakeLists.txt --replace-fail \

      "cmake_minimum_required (VERSION 2.8.7 FATAL_ERROR)" \
@@ -52,6 +55,9 @@ stdenv.mkDerivation (finalAttrs: { 
    runHook postInstall

  '';



  nativeInstallCheckInputs = [ versionCheckHook ];

  doInstallCheck = !stdenv.hostPlatform.isDarwin; # skip on Darwin - missing /libz.1.dylib in sandbox



  meta = {

    homepage = "https://github.com/lczech/gappa";

    description = "Toolkit for analyzing and visualizing phylogenetic (placement) data";