Unverified Commit 33c151ae authored by Gaétan Lepage's avatar Gaétan Lepage Committed by GitHub
Browse files

python3Packages.pymc: 5.26.1 -> 5.27.0 (#474390)

parents 4e4c01ef 879a2192

pkgs/development/python-modules/bambi/default.nix

+2 −3
Original line number Diff line number Diff line
@@ -91,9 +91,10 @@ buildPythonPackage rec { 
    "test_model_without_intercept"

    "test_non_distributional_model"

    "test_normal_with_splines"

    "test_predict_new_groups_fail"

    "test_predict_new_groups"

    "test_predict_new_groups_fail"

    "test_predict_offset"

    "test_same_variable_conditional_and_group"

    "test_set_alias_warnings"

    "test_subplot_kwargs"

    "test_transforms"
@@ -113,8 +114,6 @@ buildPythonPackage rec { 
  ];



  disabledTestPaths = [

    # bayeux-ml is not available

    "tests/test_alternative_samplers.py"

    # Tests require network access

    "tests/test_interpret.py"

    "tests/test_interpret_messages.py"

pkgs/development/python-modules/pymc/default.nix

+11 −2
Original line number Diff line number Diff line
@@ -18,18 +18,20 @@ 
  scipy,

  threadpoolctl,

  typing-extensions,



  writableTmpDirAsHomeHook,

}:



buildPythonPackage rec {

  pname = "pymc";

  version = "5.26.1";

  version = "5.27.0";

  pyproject = true;



  src = fetchFromGitHub {

    owner = "pymc-devs";

    repo = "pymc";

    tag = "v${version}";

    hash = "sha256-j1v8MzAFfOmkN7pDcF91dS5Xprls8qfTQHWdaFUO4GU=";

    hash = "sha256-wBeWydrHrF+wNZnqWa2k8tCaUvjcoiSrmY85LUhrQds=";

  };



  build-system = [
@@ -50,6 +52,13 @@ buildPythonPackage rec { 
    typing-extensions

  ];



  nativeBuildInputs = [

    # Arviz (imported by pymc) wants to write a stamp file to the homedir at import time.

    # Without $HOME being writable, `pythonImportsCheck` fails.

    # https://github.com/arviz-devs/arviz/commit/4db612908f588d89bb5bfb6b83a08ada3d54fd02

    writableTmpDirAsHomeHook

  ];



  # The test suite is computationally intensive and test failures are not

  # indicative for package usability hence tests are disabled by default.

  doCheck = false;

pkgs/development/python-modules/pytensor/default.nix

+12 −3
Original line number Diff line number Diff line
@@ -3,6 +3,7 @@ 
  stdenv,

  buildPythonPackage,

  fetchFromGitHub,

  fetchpatch,



  # build-system

  setuptools,
@@ -33,7 +34,7 @@ 


buildPythonPackage rec {

  pname = "pytensor";

  version = "2.36.0";

  version = "2.36.1";

  pyproject = true;



  src = fetchFromGitHub {
@@ -43,9 +44,18 @@ buildPythonPackage rec { 
    postFetch = ''

      sed -i 's/git_refnames = "[^"]*"/git_refnames = " (tag: ${src.tag})"/' $out/pytensor/_version.py

    '';

    hash = "sha256-tzwiPp0+xNKmndTn9Y1AXiqscQWaCC8gKgQHEtkyGag=";

    hash = "sha256-rXLtrkuwmEe5+64Aao490VqD96LJ37/mxekWOzWRMlw=";

  };



  patches = [

    # https://github.com/pymc-devs/pytensor/pull/1805

    (fetchpatch {

      name = "fix-test-tri-nonconcrete-jax-compatibility.patch";

      url = "https://github.com/pymc-devs/pytensor/commit/86310f074267e24d1b3b99ecf3d9cc0b593b170d.patch";

      hash = "sha256-KRywJLixmdDJ1GGYsd5Twjiwgce0ZFxUidhTgM6Obmg=";

    })

  ];



  build-system = [

    setuptools

    cython
@@ -160,7 +170,6 @@ buildPythonPackage rec { 
    # Don't run the most compute-intense tests

    "tests/scan/"

    "tests/tensor/"

    "tests/sparse/sandbox/"

  ];



  passthru.updateScript = nix-update-script {