python3Packages.firedrake: init at 2025.4.0.post0 (#406239)

{

  lib,

  newScope,

  stdenv,

  buildPythonPackage,

  fetchFromGitHub,

  fetchpatch2,

  python,

  pax-utils,

  # build-system

  setuptools,

  cython,

  pybind11,

  # dependencies

  decorator,

  cachetools,

  mpi4py,

  fenics-ufl,

  firedrake-fiat,

  h5py,

  libsupermesh,

  loopy,

  petsc4py,

  numpy,

  packaging,

  pkgconfig,

  progress,

  pyadjoint-ad,

  pycparser,

  pytools,

  requests,

  rtree,

  scipy,

  sympy,

  islpy,

  matplotlib,

  # tests

  pytest,

  mpi-pytest,

  mpiCheckPhaseHook,

  writableTmpDirAsHomeHook,

  # passthru.tests

  firedrake,

  mpich,

}:

let

  firedrakePackages = lib.makeScope newScope (self: {

    inherit (petsc4py.petscPackages) mpi hdf5;

    mpi4py = self.callPackage mpi4py.override { };

    h5py = self.callPackage h5py.override { };

    mpi-pytest = self.callPackage mpi-pytest.override { };

  });

in

buildPythonPackage rec {

  pname = "firedrake";

  version = "2025.4.0.post0";

  pyproject = true;

  src = fetchFromGitHub {

    owner = "firedrakeproject";

    repo = "firedrake";

    tag = version;

    hash = "sha256-wQOS4v/YkIwXdQq6JMvRbmyhnzvx6wj0O6aszNa5ZMw=";

  };

  patches = [

    (fetchpatch2 {

      url = "https://github.com/firedrakeproject/firedrake/commit/b358e33ab12b3c4bc3819c9c6e9ed0930082b750.patch?full_index=1";

      hash = "sha256-y00GB8njhmHgtAVvlv8ImsJe+hMCU1QFtbB8llEhv/I=";

    })

  ];

  postPatch =

    ''

      # relax build-dependency petsc4py

      substituteInPlace pyproject.toml --replace-fail \

        "petsc4py==3.23.0" "petsc4py"

      # These scripts are used by official source distribution only,

      # and do not make sense in our binary distribution.

      sed -i '/firedrake-\(check\|status\|run-split-tests\)/d' pyproject.toml

    ''

    + lib.optionalString stdenv.hostPlatform.isLinux ''

      substituteInPlace firedrake/petsc.py --replace-fail \

        'program = ["ldd"]' \

        'program = ["${lib.getExe' pax-utils "lddtree"}"]'

    ''

    + lib.optionalString stdenv.hostPlatform.isDarwin ''

      substituteInPlace firedrake/petsc.py --replace-fail \

        'program = ["otool"' \

        'program = ["${lib.getExe' stdenv.cc.bintools.bintools "otool"}"'

    '';

  pythonRelaxDeps = [

    "decorator"

  ];

  build-system = [

    cython

    libsupermesh

    firedrakePackages.mpi4py

    numpy

    pkgconfig

    pybind11

    setuptools

    petsc4py

    rtree

  ];

  nativeBuildInputs = [

    firedrakePackages.mpi

  ];

  dependencies =

    [

      decorator

      cachetools

      firedrakePackages.mpi4py

      fenics-ufl

      firedrake-fiat

      firedrakePackages.h5py

      libsupermesh

      loopy

      petsc4py

      numpy

      packaging

      pkgconfig

      progress

      pyadjoint-ad

      pycparser

      pytools

      requests

      rtree

      scipy

      sympy

      # required by script spydump

      matplotlib

    ]

    ++ pytools.optional-dependencies.siphash

    ++ lib.optional stdenv.hostPlatform.isDarwin islpy;

  postFixup = lib.optionalString stdenv.hostPlatform.isDarwin ''

    install_name_tool -add_rpath ${libsupermesh}/${python.sitePackages}/libsupermesh/lib \

      $out/${python.sitePackages}/firedrake/cython/supermeshimpl.cpython-*-darwin.so

  '';

  doCheck = true;

  __darwinAllowLocalNetworking = true;

  pythonImportsCheck = [ "firedrake" ];

  nativeCheckInputs = [

    pytest

    firedrakePackages.mpi-pytest

    mpiCheckPhaseHook

    writableTmpDirAsHomeHook

  ];

  preCheck = ''

    rm -rf firedrake pyop2 tinyasm tsfc

  '';

  # run official smoke tests

  checkPhase = ''

    runHook preCheck

    make check

    runHook postCheck

  '';

  passthru = {

    tests = lib.optionalAttrs stdenv.hostPlatform.isLinux {

      mpich = firedrake.override {

        petsc4py = petsc4py.override { mpi = mpich; };

      };

    };

  };

  meta = {

    homepage = "https://www.firedrakeproject.org";

    downloadPage = "https://github.com/firedrakeproject/firedrake";

    description = "Automated Finite Element System";

    license = with lib.licenses; [

      bsd3

      lgpl3Plus

    ];

    maintainers = with lib.maintainers; [ qbisi ];

  };

}

  firecrawl-py = callPackage ../development/python-modules/firecrawl-py { };

  firedrake = callPackage ../development/python-modules/firedrake { };

  firedrake-fiat = callPackage ../development/python-modules/firedrake-fiat { };

  fireflyalgorithm = callPackage ../development/python-modules/fireflyalgorithm { };