Commit 312ce6e2 authored by kyehn's avatar kyehn
Browse files

snakemake: 9.5.1 -> 9.11.6 

Changelog: https://github.com/snakemake/snakemake/blob/v9.11.6/CHANGELOG.md
parent d1231866

pkgs/by-name/sn/snakemake/package.nix

+8 −2
Original line number Diff line number Diff line
@@ -10,14 +10,14 @@ 


python3Packages.buildPythonApplication rec {

  pname = "snakemake";

  version = "9.5.1";

  version = "9.11.6";

  pyproject = true;



  src = fetchFromGitHub {

    owner = "snakemake";

    repo = "snakemake";

    tag = "v${version}";

    hash = "sha256-cSFqPSLeM7hw1bxQZ2FhlHUP+O3iyrwBz4+Jz90Zck8=";

    hash = "sha256-bbwpLSWCYKezFJj7EVn6wOLSzO/vShP98MMicKzdGSQ=";

  };



  postPatch = ''
@@ -58,6 +58,7 @@ python3Packages.buildPythonApplication rec { 
    snakemake-interface-logger-plugins

    snakemake-interface-storage-plugins

    snakemake-interface-report-plugins

    snakemake-interface-scheduler-plugins

    stopit

    tabulate

    throttler
@@ -140,6 +141,11 @@ python3Packages.buildPythonApplication rec { 
    # Requires snakemake-storage-plugin-http

    "test_keep_local"

    "test_retrieve"



    # Requires conda

    "test_jupyter_notebook"

    "test_jupyter_notebook_nbconvert"

    "test_jupyter_notebook_draft"

  ]

  ++ lib.optionals stdenv.hostPlatform.isDarwin [

    # Unclear failure: