Merge pull request #230596 from luizirber/lirber/sourmash

{ lib

, fetchPypi

, buildPythonPackage

, pythonOlder

, rustPlatform

, bitstring

, cachetools

, cffi

, deprecation

, iconv

, matplotlib

, numpy

, scipy

, screed

, hypothesis

, pytest-xdist

, pyyaml

, pytestCheckHook

}:

buildPythonPackage rec {

  pname = "sourmash";

  version = "4.8.3";

  format = "pyproject";

  disabled = pythonOlder "3.8";

  src = fetchPypi {

    inherit pname version;

    hash = "sha256-LIMpL9cLafytRFyPam/FBNi757j1v6o1FG/K2JknDQY=";

  };

  cargoDeps = rustPlatform.fetchCargoTarball {

    inherit src;

    name = "${pname}-${version}";

    hash = "sha256-mcJzFRYkdxuqqXH+ryg5v+9tQtuN1hkEeW2DF+wEJ/w=";

  };

  nativeBuildInputs = with rustPlatform; [

    cargoSetupHook

    maturinBuildHook

  ];

  buildInputs = [ iconv ];

  propagatedBuildInputs = [

    bitstring

    cachetools

    cffi

    deprecation

    matplotlib

    numpy

    scipy

    screed

  ];

  pythonImportsCheck = [ "sourmash" ];

  nativeCheckInputs = [

    hypothesis

    pytest-xdist

    pytestCheckHook

    pyyaml

  ];

  # TODO(luizirber): Working on fixing these upstream

  disabledTests = [

    "test_compare_no_such_file"

    "test_do_sourmash_index_multiscaled_rescale_fail"

    "test_metagenome_kreport_out_fail"

  ];

  meta = with lib; {

    description = "Quickly search, compare, and analyze genomic and metagenomic data sets";

    homepage = "https://sourmash.bio";

    changelog = "https://github.com/sourmash-bio/sourmash/releases/tag/v${version}";

    maintainers = with maintainers; [ luizirber ];

    license = licenses.bsd3;

  };

}

  soupsieve = callPackage ../development/python-modules/soupsieve { };

  sourmash = callPackage ../development/python-modules/sourmash { };

  soxr = callPackage ../development/python-modules/soxr {

    libsoxr = pkgs.soxr;

  };