Commit 2990b3c1 authored by Fabian Affolter's avatar Fabian Affolter
Browse files

python312Packages.dcmstack: refactor

parent fb19b3d7

pkgs/development/python-modules/dcmstack/default.nix

+24 −7
Original line number Diff line number Diff line 
{ lib

, buildPythonPackage

, fetchFromGitHub

, pythonOlder

, pytestCheckHook

, nibabel

, pydicom

, pylibjpeg-libjpeg

, pytestCheckHook

, pythonOlder

, setuptools

}:



buildPythonPackage rec {

  pname = "dcmstack";

  version = "0.9";

  format = "setuptools";

  pyproject = true;



  disabled = pythonOlder "3.7";



  src = fetchFromGitHub {

    owner = "moloney";

    repo = pname;

    repo = "dcmstack";

    rev = "refs/tags/v${version}";

    hash = "sha256-GVzih9H2m2ZGSuZMRuaDG78b95PI3j0WQw5M3l4KNCs=";

  };



  propagatedBuildInputs = [

  build-system = [

    setuptools

  ];



  dependencies = [

    nibabel

    pydicom

    pylibjpeg-libjpeg

  ];



  nativeCheckInputs = [ pytestCheckHook ];

  nativeCheckInputs = [

    pytestCheckHook

  ];



  pythonImportsCheck = [

    "dcmstack"

  ];



  disabledTestPaths = [

    # AttributeError: 'TestNitoolCli' object has no attribute 'out_dir'

    "test/test_cli.py"

  ];



  meta = with lib; {

    homepage = "https://github.com/moloney/dcmstack";

    description = "DICOM to Nifti conversion preserving metadata";

    homepage = "https://github.com/moloney/dcmstack";

    license = licenses.mit;

    maintainers = with maintainers; [ bcdarwin ];

  };

pkgs/development/python-modules/heudiconv/default.nix

+8 −10
Original line number Diff line number Diff line
@@ -14,13 +14,12 @@ 
, pythonOlder

, setuptools

, versioningit

, wheel

}:



buildPythonPackage rec {

  pname = "heudiconv";

  version = "1.1.0";

  format = "pyproject";

  pyproject = true;



  disabled = pythonOlder "3.8";
@@ -31,22 +30,21 @@ buildPythonPackage rec { 


  postPatch = ''

    substituteInPlace pyproject.toml \

      --replace "versioningit ~=" "versioningit >="

      --replace-fail "versioningit ~=" "versioningit >="

  '';



  nativeBuildInputs = [

  build-system = [

    setuptools

    versioningit

    wheel

  ];



  propagatedBuildInputs = [

    nibabel

    pydicom

    nipype

  dependencies = [

    dcmstack

    etelemetry

    filelock

    nibabel

    nipype

    pydicom

  ];



  nativeCheckInputs = [
@@ -65,8 +63,8 @@ buildPythonPackage rec { 
  ];



  meta = with lib; {

    homepage = "https://heudiconv.readthedocs.io";

    description = "Flexible DICOM converter for organizing imaging data";

    homepage = "https://heudiconv.readthedocs.io";

    changelog = "https://github.com/nipy/heudiconv/releases/tag/v${version}";

    license = licenses.asl20;

    maintainers = with maintainers; [ bcdarwin ];