Unverified Commit 28e627bb authored by Gaétan Lepage's avatar Gaétan Lepage Committed by GitHub
Browse files

python312Packages.neurokit2: init at 0.2.10 and python312Packages.biosppy: init at 2.2.2 (#371449)

parents 6396330e 81af8743

pkgs/development/python-modules/biosppy/default.nix

0 → 100644
+70 −0
Original line number Diff line number Diff line 
{

  lib,

  stdenv,

  fetchFromGitHub,

  buildPythonPackage,

  setuptools,

  bidict,

  h5py,

  matplotlib,

  numpy,

  scikit-learn,

  scipy,

  shortuuid,

  six,

  joblib,

  pywavelets,

  mock,

  tkinter,

  opencv-python,

}:



buildPythonPackage rec {

  pname = "biosppy";

  version = "2.2.2";

  pyproject = true;



  src = fetchFromGitHub {

    owner = "scientisst";

    repo = "BioSPPy";

    tag = "v${version}";

    hash = "sha256-U0ZftAlRlazSO66raH74o/6eP1RpmuFoA6HJ+xmgKR8=";

  };



  build-system = [

    setuptools

  ];



  dependencies = [

    opencv-python

    bidict

    h5py

    matplotlib

    numpy

    scikit-learn

    scipy

    shortuuid

    six

    joblib

    pywavelets

    mock

  ] ++ lib.optionals stdenv.hostPlatform.isDarwin [ tkinter ];



  doCheck = false; # no tests



  pythonImportsCheck = [

    "biosppy"

    "biosppy.signals"

    "biosppy.synthesizers"

    "biosppy.inter_plotting"

    "biosppy.features"

  ];



  meta = {

    description = "Biosignal Processing in Python";

    homepage = "https://biosppy.readthedocs.io/";

    changelog = "https://github.com/scientisst/BioSPPy/releases/tag/v${version}";

    license = lib.licenses.bsd3;

    maintainers = with lib.maintainers; [ genga898 ];

  };

}

pkgs/development/python-modules/neurokit2/default.nix

0 → 100644
+101 −0
Original line number Diff line number Diff line 
{

  lib,

  stdenv,

  fetchFromGitHub,

  buildPythonPackage,

  setuptools,

  pytest,

  scipy,

  scikit-learn,

  pandas,

  matplotlib,

  requests,

  cvxopt,

  biosppy,

  pytest-cov-stub,

  mock,

  plotly,

  astropy,

  coverage,

  pytestCheckHook,

}:



buildPythonPackage rec {

  pname = "neurokit2";

  version = "0.2.10";

  pyproject = true;



  src = fetchFromGitHub {

    owner = "neuropsychology";

    repo = "NeuroKit";

    tag = "v${version}";

    hash = "sha256-e/B1JvO6uYZ6iVskFvxZLSSXi0cPep9bBZ0JXZTVS28=";

  };



  postPatch = ''

    substituteInPlace setup.py \

      --replace-fail '"pytest-runner"' '"pytest"'

  '';



  build-system = [

    setuptools

    pytest

  ];



  dependencies = [

    scipy

    scikit-learn

    pandas

    matplotlib

    requests

    cvxopt

    biosppy

  ];



  nativeCheckInputs = [

    pytest-cov-stub

    mock

    plotly

    astropy

    coverage

    pytestCheckHook

  ];



  disabledTests = lib.optionals stdenv.hostPlatform.isDarwin [

    # Crash in matplotlib (Fatal Python error: Aborted)

    "test_events_plot"

  ];



  disabledTestPaths = [

    # Required dependencies not available in nixpkgs

    "tests/tests_complexity.py"

    "tests/tests_eeg.py"

    "tests/tests_eog.py"

    "tests/tests_ecg.py"

    "tests/tests_bio.py"

    "tests/tests_data.py"

    "tests/tests_epochs.py"

    "tests/tests_ecg_findpeaks.py"

    "tests/tests_eda.py"

    "tests/tests_emg.py"

    "tests/tests_hrv.py"

    "tests/tests_rsp.py"

    "tests/tests_ppg.py"

    "tests/tests_signal.py"



    # Dependency is broken `mne-python`

    "tests/tests_microstates.py"

  ];



  pythonImportsCheck = [

    "neurokit2"

  ];



  meta = {

    description = "Python Toolbox for Neurophysiological Signal Processing";

    homepage = "https://github.com/neuropsychology/NeuroKit";

    changelog = "https://github.com/neuropsychology/NeuroKit/releases/tag/v${version}";

    license = lib.licenses.mit;

    maintainers = with lib.maintainers; [ genga898 ];

  };

}

pkgs/top-level/python-packages.nix

+4 −0
Original line number Diff line number Diff line
@@ -1673,6 +1673,8 @@ self: super: with self; { 














  biopython = callPackage ../development/python-modules/biopython { };



























  biosppy = callPackage ../development/python-modules/biosppy { };



























  biothings-client = callPackage ../development/python-modules/biothings-client { };





























  biplist = callPackage ../development/python-modules/biplist { };










@@ -9184,6 +9186,8 @@ self: super: with self; {



























  neuralfoil = callPackage ../development/python-modules/neuralfoil { };



























  neurokit2 = callPackage ../development/python-modules/neurokit2 { };



























  neuron-full = pkgs.neuron-full.override { python3 = python; };





























  neuronpy = toPythonModule neuron-full;