Unverified Commit 21c70852 authored by annalee's avatar annalee
Browse files

python311Packages.scikit-misc: replace ILP64 libs with LP64 

scikit-misc was using the openblas package which is ILP64, however,
numpy uses LP64 as to most of the other python packages. This change
lines up scikit-misc with the same BLAS/LACAK libs numpy is using.

Also enable the only test.
parent 0bf3f5cf

pkgs/development/python-modules/scikit-misc/default.nix

+34 −15
Original line number Diff line number Diff line
@@ -7,10 +7,12 @@ 
, git

, meson-python

, pkg-config

, blas

, lapack

, numpy

, openblas

, setuptools

, wheel

, pytestCheckHook

}:



buildPythonPackage rec {
@@ -25,22 +27,17 @@ buildPythonPackage rec { 
    hash = "sha256-XV3s+y3JdMr1770S91ek6Y7MqvTg7/2cphLQldUPe5s=";

  };



  patches = [

    # check for openblas64 pkg-config

    # remove when patch merged upstream

    # https://github.com/has2k1/scikit-misc/pull/29

    (fetchpatch {

      name = "openblas64-pkg-config.patch";

      url = "https://github.com/has2k1/scikit-misc/commit/6a140de18e5e1276c7aa08bf0a047b1023aa9ae4.patch";

      hash = "sha256-HzKiRISOvoDIUIcgiYVvxhx9klwyfAh/1DDKq7inl+A=";

    })

  ];



  postPatch = ''

    patchShebangs .



    # unbound numpy and disable coverage testing in pytest

    substituteInPlace pyproject.toml \

      --replace 'numpy==' 'numpy>='

      --replace 'numpy==' 'numpy>=' \

      --replace 'addopts = "' '#addopts = "'



    # provide a version to use when git fails to get the tag

    [[ -f skmisc/_version.py ]] || \

      echo '__version__ = "${version}"' > skmisc/_version.py

  '';



  nativeBuildInputs = [
@@ -54,9 +51,31 @@ buildPythonPackage rec { 
    wheel

  ];



  buildInputs = [

  propagatedBuildInputs = [

    numpy

    openblas

  ];



  buildInputs = [

    blas

    lapack

  ];



  mesonFlags = [

    "-Dblas=${blas.pname}"

    "-Dlapack=${lapack.pname}"

  ];



  nativeCheckInputs = [

    pytestCheckHook

  ];



  # can not run tests from source directory

  preCheck = ''

    cd "$(mktemp -d)"

  '';



  pytestFlagsArray = [

    "--pyargs skmisc"

  ];



  pythonImportsCheck = [