Commit 1e8f3e3f authored by Vincent Laporte's avatar Vincent Laporte Committed by Vincent Laporte
Browse files

ocamlPackages.biocaml: remove at 0.11.2 

This package is broken (does not build with GCC 14) and the library does
not appear to be maintained upstream.
parent 24e35de2

pkgs/development/ocaml-modules/biocaml/default.nix

deleted100644 → 0
+0 −60
Original line number Diff line number Diff line 
{

  lib,

  buildDunePackage,

  fetchFromGitHub,

  fetchpatch,

  ounit,

  async,

  base64,

  camlzip,

  cfstream,

  core,

  ppx_jane,

  ppx_sexp_conv,

  rresult,

  uri,

  xmlm,

}:



buildDunePackage rec {

  pname = "biocaml";

  version = "0.11.2";



  minimalOCamlVersion = "4.11";

  duneVersion = "3";



  src = fetchFromGitHub {

    owner = "biocaml";

    repo = pname;

    rev = "v${version}";

    sha256 = "01yw12yixs45ya1scpb9jy2f7dw1mbj7741xib2xpq3kkc1hc21s";

  };



  patches = fetchpatch {

    url = "https://github.com/biocaml/biocaml/commit/3ef74d0eb4bb48d2fb7dd8b66fb3ad8fe0aa4d78.patch";

    sha256 = "0rcvf8gwq7sz15mghl9ing722rl2zpnqif9dfxrnpdxiv0rl0731";

  };



  buildInputs = [

    ppx_jane

    ppx_sexp_conv

  ];

  checkInputs = [ ounit ];

  propagatedBuildInputs = [

    async

    base64

    camlzip

    cfstream

    core

    rresult

    uri

    xmlm

  ];



  meta = with lib; {

    description = "Bioinformatics library for Ocaml";

    homepage = "http://${pname}.org";

    maintainers = [ maintainers.bcdarwin ];

    license = licenses.gpl2;

  };

}

pkgs/top-level/ocaml-packages.nix

+1 −10
Original line number Diff line number Diff line
@@ -108,7 +108,7 @@ let 


        binning = callPackage ../development/ocaml-modules/binning { };



        biocaml = janeStreet_0_15.biocaml;

        biocaml = throw "biocaml has been removed"; # 2025-06-04



        biotk = callPackage ../development/ocaml-modules/biotk { };
@@ -999,15 +999,6 @@ let 
                  piqi-ocaml = self.piqi-ocaml.override { inherit piqi; };

                };



              biocaml =

                let

                  angstrom = self.angstrom.override { inherit ppx_let; };

                in

                callPackage ../development/ocaml-modules/biocaml {

                  uri = self.uri.override { inherit angstrom; };

                  cfstream = self.cfstream.override { inherit core_kernel; };

                };



              ppx_bap = callPackage ../development/ocaml-modules/ppx_bap { };

            }

          )).overrideScope