Unverified Commit 1cd3957e authored by Weijia Wang's avatar Weijia Wang Committed by GitHub
Browse files

python3Packages.scikit-survival: fix and update (#359183)

parents 9a9f9a02 c8e9bfe9

pkgs/development/python-modules/scikit-survival/default.nix

+13 −7
Original line number Diff line number Diff line
@@ -2,9 +2,10 @@ 
  stdenv,

  lib,

  buildPythonPackage,

  fetchPypi,

  fetchFromGitHub,

  cython,

  ecos,

  eigen,

  joblib,

  numexpr,

  numpy,
@@ -18,12 +19,14 @@ 


buildPythonPackage rec {

  pname = "scikit-survival";

  version = "0.23.0";

  version = "0.23.1";

  pyproject = true;



  src = fetchPypi {

    inherit pname version;

    hash = "sha256-JFI3SDOK74vQdoUOStYlc4e0VHps97KjV3a1NQSN6E0=";

  src = fetchFromGitHub {

    owner = "sebp";

    repo = "scikit-survival";

    rev = "refs/tags/v${version}";

    hash = "sha256-6902chXALa73/kTJ5UwV4CrB7/7wn+QXKpp2ej/Dnk8=";

  };



  nativeBuildInputs = [
@@ -46,9 +49,12 @@ buildPythonPackage rec { 


  nativeCheckInputs = [ pytestCheckHook ];



  # treat numpy versions as lower bounds, same as setuptools build

  # can remove scikit-learn after 0.23.1

  postPatch = ''

    sed -i 's/numpy==/numpy>=/' pyproject.toml

    ln -s ${lib.getInclude eigen}/include/eigen3/Eigen \

      sksurv/linear_model/src/eigen

    sed -i -e 's/numpy>=2.0.0/numpy/' \

       -e 's/scikit-learn~=1.4.0/scikit-learn/' pyproject.toml

  '';



  # Hack needed to make pytest + cython work