Unverified Commit 1a3f591f authored by Justin Bedő's avatar Justin Bedő Committed by GitHub
Browse files

R updates (#416842)

parents cd233b34 de895027

pkgs/applications/science/math/R/default.nix

+2 −2
Original line number Diff line number Diff line
@@ -47,7 +47,7 @@ assert (!blas.isILP64) && (!lapack.isILP64); 


stdenv.mkDerivation (finalAttrs: {

  pname = "R";

  version = "4.5.0";

  version = "4.5.1";



  src =

    let
@@ -55,7 +55,7 @@ stdenv.mkDerivation (finalAttrs: { 
    in

    fetchurl {

      url = "https://cran.r-project.org/src/base/R-${lib.versions.major version}/${pname}-${version}.tar.gz";

      sha256 = "sha256-OzPqET4NHdyXk4dNWUnOwsc4b2bkq/sc75rsIoRsPOE=";

      hash = "sha256-tCp5IUADhmRbEBBbkcaHKHh9tcTIPJ9sMKzc5jLhu3A=";

    };



  outputs = [

pkgs/development/r-modules/bioc-annotation-packages.json

+2 −2
Original line number Diff line number Diff line
@@ -1043,8 +1043,8 @@ 
    },

    "IlluminaHumanMethylationMSAmanifest": {

      "name": "IlluminaHumanMethylationMSAmanifest",

      "version": "0.1.0",

      "sha256": "01q7i5a2zc9pby9ivsqq8pdp80732akq4g8d594h9dn6qgm0znz3",

      "version": "0.1.1",

      "sha256": "1ksw8nr4ghvih4imc9bj7xm1wvnw5wg4mhzw8mcvdvw3bjz4ly64",

      "depends": ["minfi"]

    },

    "JASPAR2018": {

pkgs/development/r-modules/bioc-experiment-packages.json

+10 −11
Original line number Diff line number Diff line
@@ -555,6 +555,12 @@ 
      "sha256": "0rmp259r5n0dqf8zn9wwfqlcbdan1qs3ni0f4izv4nj3mym435y9",

      "depends": ["ExperimentHub", "S4Vectors", "SummarizedExperiment"]

    },

    "Hiiragi2013": {

      "name": "Hiiragi2013",

      "version": "1.44.2",

      "sha256": "0kl423kr19ai4kz7a5dv3d0swgzp3911pgxyp8qf8kgy952a1rr1",

      "depends": ["Biobase", "KEGGREST", "MASS", "RColorBrewer", "affy", "boot", "clue", "cluster", "genefilter", "geneplotter", "gplots", "gtools", "lattice", "latticeExtra", "mouse4302_db", "xtable"]

    },

    "HumanAffyData": {

      "name": "HumanAffyData",

      "version": "1.34.0",
@@ -905,8 +911,8 @@ 
    },

    "ProteinGymR": {

      "name": "ProteinGymR",

      "version": "1.2.0",

      "sha256": "0li7kra2p2hg77x2jsy96dz0q052lf05kr9y4v3r35p62rzhnc35",

      "version": "1.2.1",

      "sha256": "1xwva9gnfldgx2bw62zwz3wlc84k4jlnybq81nr0xqa6xdr9fycl",

      "depends": ["AnnotationHub", "ComplexHeatmap", "ExperimentHub", "bio3d", "circlize", "dplyr", "forcats", "ggExtra", "ggdist", "gghalves", "ggplot2", "htmltools", "lifecycle", "pals", "purrr", "queryup", "r3dmol", "rlang", "spdl", "stringr", "tidyr", "tidyselect"]

    },

    "PtH2O2lipids": {
@@ -2471,8 +2477,8 @@ 
    },

    "systemPipeRdata": {

      "name": "systemPipeRdata",

      "version": "2.12.0",

      "sha256": "04xxwdcznxdhxhmn73b9njj0mrd5bn3bwznnx5wf3p5qkfdckl9g",

      "version": "2.12.2",

      "sha256": "12vxhm096gwy026gnh1ql1749gpxdsch70x3bc2a2pcnc74kk2hf",

      "depends": ["BiocGenerics", "Biostrings", "jsonlite", "remotes"]

    },

    "tartare": {
@@ -2632,13 +2638,6 @@ 
      "depends": ["AnnotationDbi", "Biobase", "GGBase", "illuminaHumanv1_db", "snpStats"],

      "broken": true

    },

    "Hiiragi2013": {

      "name": "Hiiragi2013",

      "version": "1.41.0",

      "sha256": "0z8ns2qsnng3kvzcris3hxggy1jmzrl8jwy0ndf6sbn1cqj1pnkl",

      "depends": ["Biobase", "KEGGREST", "MASS", "RColorBrewer", "affy", "boot", "clue", "cluster", "genefilter", "geneplotter", "gplots", "gtools", "lattice", "latticeExtra", "mouse4302_db", "xtable"],

      "broken": true

    },

    "MAQCsubsetAFX": {

      "name": "MAQCsubsetAFX",

      "version": "1.8.0",

pkgs/development/r-modules/bioc-packages.json

+116 −116

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pkgs/development/r-modules/cran-packages.json

+4279 −3129

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