Unverified Commit 17bd78bf authored by Dmitry Kalinkin's avatar Dmitry Kalinkin Committed by GitHub
Browse files

Merge pull request #299256 from NixOS/pr/snakemake-storage-plugin-s3_init 

python311Packages.snakemake-storage-plugin-{s3,xrootd}: init
parents e1ab04f1 2f520017

pkgs/development/python-modules/snakemake-storage-plugin-s3/default.nix

0 → 100644
+54 −0
Original line number Diff line number Diff line 
{ lib

, buildPythonPackage

, fetchFromGitHub

, boto3

, botocore

, poetry-core

, snakemake

, snakemake-interface-storage-plugins

, snakemake-interface-common

, urllib3

}:



buildPythonPackage rec {

  pname = "snakemake-storage-plugin-s3";

  version = "0.2.10";

  format = "pyproject";



  src = fetchFromGitHub {

    owner = "snakemake";

    repo = pname;

    rev = "refs/tags/v${version}";

    hash = "sha256-k21DRQdSUFkdwNb7MZJmClhIg+pdSc7H6FkDrbf4DT8=";

  };



  postPatch = ''

    substituteInPlace pyproject.toml \

      --replace ">=2.0,<2.2" "*"

  '';



  nativeBuildInputs = [

    poetry-core

  ];



  propagatedBuildInputs = [

    boto3

    botocore

    snakemake-interface-storage-plugins

    snakemake-interface-common

    urllib3

  ];



  nativeCheckInputs = [

    snakemake

  ];



  pythonImportsCheck = [ "snakemake_storage_plugin_s3" ];



  meta = with lib; {

    description = "A Snakemake storage plugin for S3 API storage (AWS S3, MinIO, etc.)";

    homepage = "https://github.com/snakemake/snakemake-storage-plugin-s3";

    license = licenses.mit;

    maintainers = with maintainers; [ veprbl ];

  };

}

pkgs/development/python-modules/snakemake-storage-plugin-xrootd/default.nix

0 → 100644
+51 −0
Original line number Diff line number Diff line 
{ lib

, buildPythonPackage

, fetchFromGitHub

, poetry-core

, snakemake

, snakemake-interface-storage-plugins

, snakemake-interface-common

, xrootd

}:



buildPythonPackage rec {

  pname = "snakemake-storage-plugin-xrootd";

  version = "unstable-2023-12-16";

  format = "pyproject";



  src = fetchFromGitHub {

    owner = "snakemake";

    repo = pname;

    rev = "408f1e956b5427c34b49eeca340492a438e8eccb";

    hash = "sha256-CcSG//D9kz0Q4LtaSngJpCtY0dbNFFuKMVmBxR1fcMo=";

  };



  # xrootd<6.0.0,>=5.6.4 not satisfied by version 5.7rc20240303

  postPatch = ''

    substituteInPlace pyproject.toml \

      --replace 'xrootd = "^5.6.4"' ""

  '';



  nativeBuildInputs = [

    poetry-core

  ];



  propagatedBuildInputs = [

    snakemake-interface-storage-plugins

    snakemake-interface-common

    xrootd

  ];



  nativeCheckInputs = [

    snakemake

  ];



  pythonImportsCheck = [ "snakemake_storage_plugin_xrootd" ];



  meta = with lib; {

    description = "A Snakemake storage plugin for handling input and output via XRootD";

    homepage = "https://github.com/snakemake/snakemake-storage-plugin-xrootd";

    license = licenses.mit;

    maintainers = with maintainers; [ veprbl ];

  };

}

pkgs/top-level/python-packages.nix

+8 −0
Original line number Diff line number Diff line
@@ -13914,6 +13914,10 @@ self: super: with self; { 
    inherit (self) python;

  });













  snakemake = toPythonModule (pkgs.snakemake.override {













    python3 = python;













  });



























  snakemake-executor-plugin-cluster-generic = callPackage ../development/python-modules/snakemake-executor-plugin-cluster-generic { };





























  snakemake-interface-common = callPackage ../development/python-modules/snakemake-interface-common { };









@@ -13924,6 +13928,10 @@ self: super: with self; {



























  snakemake-interface-storage-plugins = callPackage ../development/python-modules/snakemake-interface-storage-plugins { };



























  snakemake-storage-plugin-s3 = callPackage ../development/python-modules/snakemake-storage-plugin-s3 { };

























  snakemake-storage-plugin-xrootd = callPackage ../development/python-modules/snakemake-storage-plugin-xrootd { };



























  snakebite = callPackage ../development/python-modules/snakebite { };





























  snakeviz = callPackage ../development/python-modules/snakeviz { };