Merge pull request #236810 from natsukium/cmtk/update

{ lib, stdenv, fetchurl, cmake }:

{ lib

, stdenv

, bzip2

, cmake

, fetchurl

, fftw

, llvmPackages

, zlib

}:

stdenv.mkDerivation rec {

stdenv.mkDerivation (finalAttrs: {

  pname = "cmtk";

  version = "3.3.1";

  version = "3.3.2";

  src = fetchurl {

    name = "cmtk-source.tar.gz";

    url = "https://www.nitrc.org/frs/download.php/8198/CMTK-${version}-Source.tar.gz//?i_agree=1&download_now=1";

    sha256 = "1nmsga9m7vcc4y4a6zl53ra3mwlgjwdgsq1j291awkn7zr1az6qs";

    url = "https://www.nitrc.org/frs/download.php/13188/CMTK-${finalAttrs.version}-Source.tar.gz//?i_agree=1&download_now=1";

    hash = "sha256-iE164NCOSOypZLLZfZy9RTyrS+YnY9ECqfb4QhlsMS4=";

  };

  nativeBuildInputs = [ cmake ];

  buildInputs = [

    bzip2

    fftw

    zlib

  ] ++ lib.optionals stdenv.cc.isClang [

    llvmPackages.openmp

  ];

  env.NIX_CFLAGS_COMPILE = toString [

    "-std=c++11"

    (lib.optional stdenv.cc.isClang "-Wno-error=c++11-narrowing")

    (lib.optionalString stdenv.cc.isGNU "-std=c++11")

    (lib.optionalString stdenv.cc.isClang "-Wno-error=c++11-narrowing")

    (lib.optionalString (stdenv.isDarwin && stdenv.isAarch64) "-Dfinite=isfinite")

  ];

  meta = with lib; {

    broken = stdenv.isDarwin;

    description = "Computational Morphometry Toolkit";

    longDescription = ''A software toolkit for computational morphometry of

      biomedical images, CMTK comprises a set of command line tools and a

      back-end general-purpose library for processing and I/O'';

    maintainers = with maintainers; [ tbenst ];

    platforms = platforms.all;

    license = licenses.gpl3;

    license = licenses.gpl3Plus;

    homepage = "https://www.nitrc.org/projects/cmtk/";

  };

}

})