Merge pull request #224345 from natsukium/blast/darwin

{ lib

, stdenv

, fetchurl

, python3

, perl

, blast

, autoPatchelfHook

, zlib

, bzip2

, glib

, libxml2

, coreutils

}:

let

  pname = "blast-bin";

  version = "2.13.0";

  srcs = rec {

    x86_64-linux = fetchurl {

      url = "https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${version}/ncbi-blast-${version}+-x64-linux.tar.gz";

      hash = "sha256-QPK3OdT++GoNI1NHyEpu2/hB2hqHYPQ/vNXFAVCwVEc=";

    };

    aarch64-linux = fetchurl {

      url = "https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${version}/ncbi-blast-${version}+-x64-arm-linux.tar.gz";

      hash = "sha256-vY8K66k7KunpBUjFsJTTb+ur5n1XmU0/mYxhZsi9ycs=";

    };

    x86_64-darwin = fetchurl {

      url = "https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${version}/ncbi-blast-${version}+-x64-macosx.tar.gz";

      hash = "sha256-Y0JlOUl9Ego6LTxTCNny3P5c1H3fApPXQm7Z6Zhq9RA=";

    };

    aarch64-darwin = x86_64-darwin;

  };

  src = srcs.${stdenv.hostPlatform.system};

in

stdenv.mkDerivation {

  inherit pname version src;

  nativeBuildInputs = lib.optional stdenv.isLinux [ autoPatchelfHook ];

  buildInputs = [ python3 perl ] ++ lib.optionals stdenv.isLinux [ zlib bzip2 glib libxml2 ];

  installPhase = ''

    runHook preInstall

    install -Dm755 bin/* -t $out/bin

    runHook postInstall

  '';

  preFixup = ''

    substituteInPlace $out/bin/get_species_taxids.sh \

      --replace /bin/rm ${coreutils}/bin/rm

  '';

  meta = with lib; {

    inherit (blast.meta) description homepage license;

    platforms = [ "x86_64-linux" "aarch64-linux" "x86_64-darwin" "aarch64-darwin" ];

    maintainers = with maintainers; [ natsukium ];

  };

}

    inherit (darwin.apple_sdk.frameworks) ApplicationServices;

  };

  blast-bin = callPackage ../applications/science/biology/blast/bin.nix { };

  bpp-core = callPackage ../development/libraries/science/biology/bpp-core {

    stdenv = gcc10StdenvCompat;

  };