Commit 14a19fa2 authored by Manuel Frischknecht's avatar Manuel Frischknecht
Browse files

hh-suite: fix build on GCC 13 

The build of `hh-suite` stopped working with GCC 13 because
GCC stopped transitively including a couple of headers like
`cstdint` in various scenarios.

There already is an upstream PR proposed that fixes this issue [1]
but hasn't been merged yet. This change pulls in this correction
using `fetchpatch`, fixing the build for now.

[1]: https://github.com/soedinglab/hh-suite/pull/357
parent a5d28c9b

pkgs/applications/science/biology/hh-suite/default.nix

+10 −0
Original line number Diff line number Diff line 
{ lib

, stdenv

, fetchFromGitHub

, fetchpatch

, cmake

, xxd

, enableMpi ? false
@@ -18,6 +19,15 @@ stdenv.mkDerivation rec { 
    hash = "sha256-kjNqJddioCZoh/cZL3YNplweIGopWIGzCYQOnKDqZmw=";

  };



  patches = [

    # Should be removable as soon as this upstream PR is merged: https://github.com/soedinglab/hh-suite/pull/357

    (fetchpatch {

      name = "fix-gcc13-build-issues.patch";

      url = "https://github.com/soedinglab/hh-suite/commit/cec47cba5dcd580e668b1ee507c9282fbdc8e7d7.patch";

      hash = "sha256-Msdmj9l8voPYXK0SSwUA6mEbFLBhTjjE/Kjp0VL4Kf4=";

    })

  ];



  nativeBuildInputs = [ cmake xxd ];

  cmakeFlags = lib.optional stdenv.hostPlatform.isx86 "-DHAVE_SSE2=1"

    ++ lib.optional stdenv.hostPlatform.isAarch "-DHAVE_ARM8=1"