Merge pull request #187587 from onny/mne-python

{ lib

, buildPythonPackage

, fetchFromGitHub

, isPy27

, numpy

, scipy

, pytestCheckHook

, pytest-cov

, pytest-timeout

, h5py

, matplotlib

, nibabel

, pandas

, scikit-learn

, decorator

, jinja2

, pooch

, tqdm

, setuptools

}:

buildPythonPackage rec {

  pname = "mne-python";

  version = "1.0.3";

  disabled = isPy27;

  version = "1.1.0";

  # PyPI dist insufficient to run tests

  src = fetchFromGitHub {

    owner = "mne-tools";

    repo = pname;

    rev = "refs/tags/v${version}";

    sha256 = "sha256-6eDS/hKqEQqUxJtnfsPhxw9b4p5CC1ifnxVCRBmVVA8=";

    sha256 = "sha256-p4brwO6uERM2vJdkJ34GdeAKk07QeVEmQrZMPcDjI2I=";

  };

  propagatedBuildInputs = [ numpy scipy ];

  propagatedBuildInputs = [

    decorator

    jinja2

    matplotlib

    numpy

    pooch

    scipy

    setuptools

    tqdm

  ];

  # all tests pass, but Pytest hangs afterwards - probably some thread hasn't terminated

  doCheck = false;

  checkInputs = [

    pytestCheckHook

    pytest-cov

    pytest-timeout

    h5py

    matplotlib

    nibabel

    pandas

    pytestCheckHook

    scikit-learn

    pytest-timeout

  ];

  preCheck = ''

    export HOME=$TMP

    export MNE_SKIP_TESTING_DATASET_TESTS=true

    export MNE_SKIP_NETWORK_TESTS=1

  '';

  # all tests pass, but Pytest hangs afterwards - probably some thread hasn't terminated

  doCheck = false;

  pythonImportsCheck = [ "mne" ];

  meta = with lib; {