Merge pull request #313266 from natsukium/biopandas/update

{ lib

, buildPythonPackage

, fetchFromGitHub

, looseversion

, mmtf-python

, nose

, numpy

, pandas

, pythonRelaxDepsHook

{

  lib,

  buildPythonPackage,

  fetchFromGitHub,

  setuptools,

  looseversion,

  mmtf-python,

  numpy,

  pandas,

  pynose,

  pytestCheckHook,

  pythonRelaxDepsHook,

}:

buildPythonPackage rec {

  pname = "biopandas";

  version = "0.4.1";

  format = "setuptools";

  version = "0.5.0";

  pyproject = true;

  src = fetchFromGitHub {

    owner = "BioPandas";

    repo = "biopandas";

    rev = "refs/tags/v${version}";

    hash = "sha256-PRdemBo+bB2xJWmF2NylFTfNwEEo67i6XSaeDAFmQ/c=";

    hash = "sha256-1c78baBBsDyvAWrNx5mZI/Q75wyXv0DAwAdWm3EwX/I=";

  };

  nativeBuildInputs = [

    pythonRelaxDepsHook

  ];

  nativeBuildInputs = [ pythonRelaxDepsHook ];

  pythonRelaxDeps = [

    "looseversion"

  ];

  pythonRelaxDeps = [ "looseversion" ];

  propagatedBuildInputs = [

  build-system = [ setuptools ];

  dependencies = [

    numpy

    pandas

    mmtf-python

  ];

  nativeCheckInputs = [

    nose

    pynose

    pytestCheckHook

  ];

  checkPhase = ''

    runHook preCheck

    nosetests

    runHook postCheck

  '';

  pythonImportsCheck = [

    "biopandas"

  disabledTests = [

    # require network access

    "test_mmcif_pdb_conversion"

    "test_fetch_pdb"

    "test_write_mmtf_bp"

    "test_write_mmtf"

    "test_b_factor_shift"

  ];

  pythonImportsCheck = [ "biopandas" ];

  meta = {

    description = "Working with molecular structures in pandas DataFrames";

    homepage = "https://github.com/BioPandas/biopandas";