Unverified Commit 099f05df authored by Weijia Wang's avatar Weijia Wang Committed by GitHub
Browse files

igv: 2.17.4 -> 2.19.6 (#446252)

parents 2bab612c 5a3404c6

pkgs/by-name/ig/igv/package.nix

+9 −6
Original line number Diff line number Diff line
@@ -2,7 +2,7 @@ 
  lib,

  stdenv,

  fetchzip,

  jdk17,

  jdk21,

  testers,

  wrapGAppsHook3,

  igv,
@@ -10,10 +10,10 @@ 


stdenv.mkDerivation rec {

  pname = "igv";

  version = "2.17.4";

  version = "2.19.6";

  src = fetchzip {

    url = "https://data.broadinstitute.org/igv/projects/downloads/${lib.versions.majorMinor version}/IGV_${version}.zip";

    sha256 = "sha256-LF/rwm/XlLHAJjiAlQVTmx5l+5Np2b5rPjoCdN/qERU=";

    sha256 = "sha256-hemTOCNBfigpvlFStBbxGGLpORYPfh6vn1pyE8hKWHw=";

  };



  installPhase = ''
@@ -21,10 +21,10 @@ stdenv.mkDerivation rec { 
    cp -Rv * $out/share/



    sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igv.sh

    sed -i 's#\bjava\b#${jdk17}/bin/java#g' $out/share/igv.sh

    sed -i 's#\bjava\b#${jdk21}/bin/java#g' $out/share/igv.sh



    sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igvtools

    sed -i 's#\bjava\b#${jdk17}/bin/java#g' $out/share/igvtools

    sed -i 's#\bjava\b#${jdk21}/bin/java#g' $out/share/igvtools



    ln -s $out/share/igv.sh $out/bin/igv

    ln -s $out/share/igvtools $out/bin/igvtools
@@ -43,6 +43,9 @@ stdenv.mkDerivation rec { 
    description = "Visualization tool for interactive exploration of genomic datasets";

    license = licenses.mit;

    platforms = platforms.unix;

    maintainers = [ maintainers.mimame ];

    maintainers = [

      maintainers.mimame

      maintainers.rollf

    ];

  };

}