Commit 06fc8aa4 authored by Ben Darwin's avatar Ben Darwin
Browse files

python312Packages.itk: init at 5.4.0

parent 53a541a2

pkgs/development/libraries/itk/generic.nix

+91 −33
Original line number Diff line number Diff line
@@ -10,6 +10,8 @@ 
  fetchFromGitHub,

  fetchpatch,

  cmake,

  castxml,

  swig,

  expat,

  fftw,

  gdcm,
@@ -20,13 +22,21 @@ 
  libpng,

  libX11,

  libuuid,

  patchelf,

  python ? null,

  numpy ? null,

  xz,

  vtk,

  which,

  zlib,

  Cocoa,

  enablePython ? false,

}:



let

  # Python wrapper contains its own VTK support incompatible with MODULE_ITKVtkGlue

  withVtk = !enablePython;



  itkGenericLabelInterpolatorSrc = fetchFromGitHub {

    owner = "InsightSoftwareConsortium";

    repo = "ITKGenericLabelInterpolator";
@@ -47,6 +57,19 @@ let 
    rev = "bb896868fc6480835495d0da4356d5db009592a6";

    hash = "sha256-MfaIA0xxA/pzUBSwnAevr17iR23Bo5iQO2cSyknS3o4=";

  };



  # remove after next swig update:

  swigUnstable = swig.overrideAttrs ({

    version = "4.2.1-unstable-2024-08-19";



    src = fetchFromGitHub {

      owner = "swig";

      repo = "swig";

      rev = "5ac5d90f970759fbe705fae551d0743a7c63c67e";

      hash = "sha256-32EFLHpP4l04nqrc8dt4Qsr8deTBqLt8lUlhnNnaIGU=";

    };



  });

in



stdenv.mkDerivation {
@@ -77,7 +100,8 @@ stdenv.mkDerivation { 
    ln -sr ${itkSimpleITKFiltersSrc} Modules/External/ITKSimpleITKFilters

  '';



  cmakeFlags = [

  cmakeFlags =

    [

      "-DBUILD_EXAMPLES=OFF"

      "-DBUILD_SHARED_LIBS=ON"

      "-DITK_FORBID_DOWNLOADS=ON"
@@ -94,22 +118,38 @@ stdenv.mkDerivation { 
      "-DModule_ITKIOMINC=ON"

      "-DModule_ITKIOTransformMINC=ON"

      "-DModule_SimpleITKFilters=ON"

    "-DModule_ITKVtkGlue=ON"

      "-DModule_ITKReview=ON"

      "-DModule_MGHIO=ON"

      "-DModule_AdaptiveDenoising=ON"

      "-DModule_GenericLabelInterpolator=ON"

  ];

    ]

    ++ lib.optionals enablePython [

      "-DITK_WRAP_PYTHON=ON"

      "-DITK_USE_SYSTEM_CASTXML=ON"

      "-DITK_USE_SYSTEM_SWIG=ON"

      "-DPY_SITE_PACKAGES_PATH=${placeholder "out"}/${python.sitePackages}"

    ]

    ++ lib.optionals withVtk [ "-DModule_ITKVtkGlue=ON" ];



  nativeBuildInputs = [

  nativeBuildInputs =

    [

      cmake

      xz

    ]

    ++ lib.optionals enablePython [

      castxml

      swigUnstable

      which

    ];

  buildInputs = [



  buildInputs =

    [

      libX11

      libuuid

    vtk

  ] ++ lib.optionals stdenv.isDarwin [ Cocoa ];

    ]

    ++ lib.optionals stdenv.isDarwin [ Cocoa ]

    ++ lib.optionals enablePython [ python ]

    ++ lib.optionals withVtk [ vtk ];

  # Due to ITKVtkGlue=ON and the additional dependencies needed to configure VTK 9

  # (specifically libGL and libX11 on Linux),

  # it's now seemingly necessary for packages that configure ITK to
@@ -130,12 +170,30 @@ stdenv.mkDerivation { 
    libpng

    libtiff

    zlib

  ] ++ vtk.propagatedBuildInputs;

  ] ++ lib.optionals withVtk vtk.propagatedBuildInputs ++ lib.optionals enablePython [ numpy ];



  postInstall = lib.optionalString enablePython ''

    substitute \

      ${./itk.egg-info} \

      $out/${python.sitePackages}/itk-${version}.egg-info \

      --subst-var-by ITK_VER "${version}"

  '';



  # remove forbidden reference to /build which occur when building the Python wrapping

  # (also remove a copy of itkTestDriver with incorrect permissions/RPATH):

  preFixup = lib.optionals enablePython ''

    rm $out/${python.sitePackages}/itk/itkTestDriver

    find $out/${python.sitePackages}/itk -type f -name '*.so*' -exec \

      patchelf {} --shrink-rpath --allowed-rpath-prefixes "$NIX_STORE" \;

  '';



  meta = {

    description = "Insight Segmentation and Registration Toolkit";

    homepage = "https://www.itk.org";

    license = lib.licenses.asl20;

    maintainers = with lib.maintainers; [ bcdarwin ];

    # aarch64-linux Python wrapping fails with "error: unknown type name '_Float128'" and similar;

    # compilation runs slowly and times out on Darwin

    platforms = with lib.platforms; if enablePython then [ "x86_64-linux" ] else unix;

  };

}

pkgs/development/libraries/itk/itk.egg-info

0 → 100644
+5 −0
Original line number Diff line number Diff line 
Metadata-Version: 2.1

Name: itk

Version: @ITK_VER@

Summary: Insight Segmentation and Registration Toolkit

Platform: UNKNOWN

pkgs/top-level/python-packages.nix

+7 −1
Original line number Diff line number Diff line
@@ -6206,6 +6206,12 @@ self: super: with self; { 














  itanium-demangler = callPackage ../development/python-modules/itanium-demangler { };



























  itk = toPythonModule (pkgs.itk.override {













    inherit python numpy;













    enablePython = true;













  });







































  item-synchronizer = callPackage ../development/python-modules/item-synchronizer { };





























  itemadapter = callPackage ../development/python-modules/itemadapter { };










@@ -14477,7 +14483,7 @@ self: super: with self; {













  simplehound = callPackage ../development/python-modules/simplehound { };





























  simpleitk = callPackage ../development/python-modules/simpleitk {













    inherit (pkgs) simpleitk;













    inherit (pkgs) itk simpleitk;















  };





























  simplejson = callPackage ../development/python-modules/simplejson { };