python3Packages.scikit-posthocs: init at 0.7.0

From 02266a00ce0eb6a089e7efe07816da1aa5152fc9 Mon Sep 17 00:00:00 2001

From: Maksim Terpilovskii <maximtrp@gmail.com>

Date: Sun, 31 Jul 2022 12:25:14 +0300

Subject: [PATCH] increased abs tolerance for wilcoxon test

---

 tests/test_posthocs.py | 2 +-

 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/test_posthocs.py b/tests/test_posthocs.py

index 956d808..8cc65e4 100644

--- a/tests/test_posthocs.py

+++ b/tests/test_posthocs.py

@@ -471,7 +471,7 @@ class TestPosthocs(unittest.TestCase):

                               [2.857818e-06, 1.230888e-05, 1]])

         results = sp.posthoc_wilcoxon(self.df.sort_index(), val_col = 'pulse', group_col = 'kind')

-        self.assertTrue(np.allclose(results, r_results))

+        self.assertTrue(np.allclose(results, r_results, atol=1e-4))

     def test_posthoc_scheffe(self):

-- 

2.36.1

From 5416ffba3ab01aebab3909400b5a9e847022898e Mon Sep 17 00:00:00 2001

From: Maksim Terpilovskii <maximtrp@gmail.com>

Date: Thu, 16 Mar 2023 00:20:02 +0300

Subject: [PATCH] Update test_posthocs.py

---

 tests/test_posthocs.py | 4 ++--

 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/tests/test_posthocs.py b/tests/test_posthocs.py

index 8cc65e4..42ca5f3 100644

--- a/tests/test_posthocs.py

+++ b/tests/test_posthocs.py

@@ -71,7 +71,7 @@ class TestPosthocs(unittest.TestCase):

         a = splt.sign_plot(x, flat=True, labels=False)

         with self.assertRaises(ValueError):

             splt.sign_plot(x.astype(float), flat=True, labels=False)

-        self.assertTrue(isinstance(a, ma._subplots.Axes))

+        self.assertTrue(isinstance(a, ma._axes.Axes))

     def test_sign_plot_nonflat(self):

@@ -85,7 +85,7 @@ class TestPosthocs(unittest.TestCase):

         with self.assertRaises(ValueError):

             splt.sign_plot(x.astype(np.int64), labels=False)

-        self.assertTrue(isinstance(a, ma._subplots.Axes) and isinstance(cbar, mpl.colorbar.ColorbarBase))

+        self.assertTrue(isinstance(a, ma._axes.Axes) and isinstance(cbar, mpl.colorbar.ColorbarBase))

     # Outliers tests

     def test_outliers_iqr(self):

-- 

2.36.1

{ lib

, buildPythonPackage

, fetchFromGitHub

, setuptools

, wheel

, matplotlib

, numpy

, pandas

, scipy

, seaborn

, statsmodels

, pytestCheckHook

, seaborn-data

}:

buildPythonPackage rec {

  pname = "scikit-posthocs";

  version = "0.7.0";

  format = "pyproject";

  src = fetchFromGitHub {

    owner = "maximtrp";

    repo = "scikit-posthocs";

    rev = "v${version}";

    hash = "sha256-IkvAc684AWEK427OGAa4qVy6leWmd3b8Dnhd5bYAt5I=";

  };

  patches = [

    # Fixed on master: https://github.com/maximtrp/scikit-posthocs/commit/02266a00ce0eb6a089e7efe07816da1aa5152fc9

    ./0001-increased-abs-tolerance-for-wilcoxon-test.patch

    # Fixed on master: https://github.com/maximtrp/scikit-posthocs/commit/5416ffba3ab01aebab3909400b5a9e847022898e

    ./0002-Update-test_posthocs.py.patch

  ];

  nativeBuildInputs = [

    setuptools

    wheel

  ];

  propagatedBuildInputs = [

    matplotlib

    numpy

    pandas

    scipy

    seaborn

    statsmodels

  ];

  preCheck = ''

    # tests require to write to home directory

    export SEABORN_DATA=${seaborn-data.exercise}

  '';

  nativeCheckInputs = [

    pytestCheckHook

  ];

  pythonImportsCheck = [ "scikit_posthocs" ];

  meta = with lib; {

    description = "Multiple Pairwise Comparisons (Post Hoc) Tests in Python";

    homepage = "https://github.com/maximtrp/scikit-posthocs";

    changelog = "https://github.com/maximtrp/scikit-posthocs/releases/tag/v${version}";

    license = licenses.mit;

    maintainers = with maintainers; [ mbalatsko ];

  };

}

  scikit-optimize = callPackage ../development/python-modules/scikit-optimize { };

  scikit-posthocs = callPackage ../development/python-modules/scikit-posthocs { };

  scikit-rf = callPackage ../development/python-modules/scikit-rf { };

  scikits-odes = callPackage ../development/python-modules/scikits-odes { };