Commit 04f9a5f5 authored by Gaetan Lepage's avatar Gaetan Lepage
Browse files

python3Packages.scanpy: fix build

parent bc459417

pkgs/development/python-modules/scanpy/default.nix

+13 −0
Original line number Diff line number Diff line
@@ -45,6 +45,7 @@ 
  scikit-misc,



  # tests

  dependency-groups,

  jinja2,

  pytest-cov-stub,

  pytest-mock,
@@ -156,6 +157,7 @@ buildPythonPackage (finalAttrs: { 
  };



  nativeCheckInputs = [

    dependency-groups

    jinja2

    pytest-cov-stub

    pytest-mock
@@ -172,6 +174,12 @@ buildPythonPackage (finalAttrs: { 
    export NUMBA_CACHE_DIR=$(mktemp -d);

  '';



  pytestFlagsArray = [

    # UserWarning: 'where' used without 'out', expect unitialized memory in output.

    # If this is intentional, use out=None.

    "-Wignore::UserWarning"

  ];



  disabledTestPaths = [

    # try to download data:

    "tests/test_aggregated.py"
@@ -221,6 +229,11 @@ buildPythonPackage (finalAttrs: { 
    # 'write/test.h5ad', errno = 2, error message = 'No such file or directory', flags = 13, o_flags

    # = 242)

    "test_write"



    # Snapshot tests failing because of warnings in output

    "scanpy.datasets._datasets.krumsiek11"

    "scanpy.datasets._datasets.toggleswitch"

    "scanpy.preprocessing._simple.filter_cells"

  ];



  pythonImportsCheck = [ "scanpy" ];