Unverified Commit 04109824 authored by kirillrdy's avatar kirillrdy Committed by GitHub
Browse files

python3Packages: export MPLBACKEND to Agg to fix matplotlib tests on darwin (#480979)

parents 67c55301 1fcce504

pkgs/development/python-modules/dscribe/default.nix

+10 −10
Original line number Diff line number Diff line
@@ -53,9 +53,14 @@ buildPythonPackage rec { 
    "dscribe.ext"

  ];



  preCheck =

    # Prevents python from loading dscribe from the current working directory instead of using $out

  preCheck = ''

    ''

      rm -rf dscribe

    ''

    # Prevents 'Fatal Python error: Aborted' on darwin during checkPhase

    + lib.optionalString stdenv.hostPlatform.isDarwin ''

      export MPLBACKEND="Agg"

    '';



  nativeCheckInputs = [
@@ -72,11 +77,6 @@ buildPythonPackage rec { 
      [

        # AssertionError on a numerical test

        "test_cell_list"

      ]

  ++ lib.optionals stdenv.hostPlatform.isDarwin [

    # Fatal Python error: Aborted

    # matplotlib/backend_bases.py", line 2654 in create_with_canvas

    "test_examples"

      ];



  # Broken due to use of missing _get_constraints attr in ase >= 3.26.0

pkgs/development/python-modules/niaarm/default.nix

+5 −6
Original line number Diff line number Diff line
@@ -52,15 +52,14 @@ buildPythonPackage rec { 
  ]

  ++ lib.optionals (pythonOlder "3.11") [ tomli ];



  env = lib.optionalAttrs stdenv.hostPlatform.isDarwin {

    # Prevents 'Fatal Python error: Aborted' on darwin during checkPhase

    MPLBACKEND = "Agg";

  };



  disabledTests = [

    # Test requires extra nltk data dependency

    "test_text_mining"

  ]

  ++ lib.optionals stdenv.hostPlatform.isDarwin [

    # Fatal Python error: Aborted

    # matplotlib/backend_bases.py", line 2654 in create_with_canvas

    "test_hill_slopes"

    "test_two_key_plot"

  ];



  nativeCheckInputs = [ pytestCheckHook ];

pkgs/development/python-modules/nifty8/default.nix

+5 −11
Original line number Diff line number Diff line
@@ -70,22 +70,16 @@ buildPythonPackage rec { 
    openssh

  ];



  disabledTests = lib.optionals stdenv.hostPlatform.isDarwin [

    # Fatal Python error: Aborted

    # matplotlib/backend_bases.py", line 2654 in create_with_canvas

    "test_optimize_kl_domain_expansion"

    "test_plot_priorsamples"

  # Prevents 'Fatal Python error: Aborted' on darwin during checkPhase

  preCheck = lib.optionalString stdenv.hostPlatform.isDarwin ''

    export MPLBACKEND="Agg"

  '';



  disabledTests = lib.optionals stdenv.hostPlatform.isDarwin [

    # [XPASS(strict)] np.vdot inaccurate for single precision

    "test_vdot"

  ];



  disabledTestPaths = lib.optionals stdenv.hostPlatform.isDarwin [

    # Fatal Python error: Aborted

    # matplotlib/backend_bases.py", line 2654 in create_with_canvas

    "test/test_plot.py"

  ];



  __darwinAllowLocalNetworking = true;

  postCheck =

    lib.optionalString

pkgs/development/python-modules/optuna/default.nix

+9 −22
Original line number Diff line number Diff line
@@ -84,9 +84,14 @@ buildPythonPackage rec { 
    ];

  };



  preCheck =

    # grpc tests are racy

  preCheck = ''

    ''

      sed -i '/"grpc",/d' optuna/testing/storages.py

    ''

    # Prevents 'Fatal Python error: Aborted' on darwin during checkPhase

    + lib.optionalString stdenv.hostPlatform.isDarwin ''

      export MPLBACKEND="Agg"

    '';



  nativeCheckInputs = [
@@ -117,24 +122,6 @@ buildPythonPackage rec { 
    "test_plot_intermediate_values"

    "test_plot_rank"

    "test_plot_terminator_improvement"



    # Fatal Python error: Aborted

    # matplotlib/backend_bases.py", line 2654 in create_with_canvas

    "test_edf_plot_no_trials"

    "test_get_timeline_plot"

    "test_plot_contour"

    "test_plot_contour_customized_target_name"

    "test_plot_edf_with_multiple_studies"

    "test_plot_edf_with_target"

    "test_plot_parallel_coordinate"

    "test_plot_parallel_coordinate_customized_target_name"

    "test_plot_param_importances"

    "test_plot_param_importances_customized_target_name"

    "test_plot_param_importances_multiobjective_all_objectives_displayed"

    "test_plot_slice"

    "test_plot_slice_customized_target_name"

    "test_target_is_none_and_study_is_multi_obj"

    "test_visualizations_with_single_objectives"

  ];



  disabledTestPaths = lib.optionals stdenv.hostPlatform.isDarwin [

pkgs/development/python-modules/pymatgen/default.nix

+4 −19
Original line number Diff line number Diff line
@@ -133,6 +133,10 @@ buildPythonPackage rec { 
    # ensure tests can find these

    ''

      export PMG_TEST_FILES_DIR="$(realpath ./tests/files)"

    ''

    # Prevents 'Fatal Python error: Aborted' on darwin during checkPhase

    + lib.optionalString stdenv.hostPlatform.isDarwin ''

      export MPLBACKEND="Agg"

    '';



  disabledTests = [
@@ -147,25 +151,6 @@ buildPythonPackage rec { 
    "test_mean_field"

  ]

  ++ lib.optionals stdenv.hostPlatform.isDarwin [

    # Fatal Python error: Aborted

    # matplotlib/backend_bases.py", line 2654 in create_with_canvas

    # https://github.com/materialsproject/pymatgen/issues/4452

    "test_angle"

    "test_as_dict_from_dict"

    "test_attributes"

    "test_basic"

    "test_core_state_eigen"

    "test_eos_func"

    "test_get_info_cohps_to_neighbors"

    "test_get_plot"

    "test_get_point_group_operations"

    "test_matplotlib_plots"

    "test_ph_plot_w_gruneisen"

    "test_plot"

    "test_proj_bandstructure_plot"

    "test_structure"

    "test_structure_environments"



    # attempt to insert nil object from objects[1]

    "test_timer_10_2_7"

    "test_timer"