Commit 002a7b2a authored by Ben Darwin's avatar Ben Darwin
Browse files

python313Packages.anndata: 0.11.4 -> 0.12.2

parent 22005326

pkgs/development/python-modules/anndata/default.nix

+10 −2
Original line number Diff line number Diff line
@@ -12,6 +12,7 @@ 
  hatchling,

  joblib,

  lib,

  legacy-api-wrap,

  natsort,

  numba,

  numpy,
@@ -32,14 +33,14 @@ 


buildPythonPackage rec {

  pname = "anndata";

  version = "0.11.4";

  version = "0.12.2";

  pyproject = true;



  src = fetchFromGitHub {

    owner = "scverse";

    repo = "anndata";

    tag = version;

    hash = "sha256-9RDR0veZ8n2sq0kUbAkS2nP57u47cQxmubzuWWYBKBY=";

    hash = "sha256-uGkeSlYcphRnIFfe9UcLvnupKeMzAIm5wT8fp3gmPKw=";

  };



  build-system = [
@@ -50,6 +51,7 @@ buildPythonPackage rec { 
  dependencies = [

    array-api-compat

    h5py

    legacy-api-wrap

    natsort

    numpy

    pandas
@@ -92,18 +94,24 @@ buildPythonPackage rec { 
  ];



  disabledTests = [

    # requires data from a previous test execution:

    "test_no_diff"



    # doctests that require scanpy, creating a circular dependency chain. These

    # do not work in disabledTestPaths for some reason.

    "anndata._core.anndata.AnnData.concatenate"

    "anndata._core.anndata.AnnData.obs_names_make_unique"

    "anndata._core.anndata.AnnData.var_names_make_unique"

    "anndata._core.extensions.register_anndata_namespac"

    "anndata._core.merge.concat"

    "anndata._core.merge.gen_reindexer"

    "anndata._core.sparse_dataset.sparse_dataset"

    "anndata._io.specs.registry.read_elem_as_dask"

    "anndata._io.specs.registry.read_elem_lazy"

    "anndata._io.utils.report_read_key_on_error"

    "anndata._io.utils.report_write_key_on_error"

    "anndata._warnings.ImplicitModificationWarning"

    "anndata.experimental.backed._io.read_lazy"

    "anndata.experimental.merge.concat_on_disk"

    "anndata.experimental.multi_files._anncollection.AnnCollection"

    "anndata.utils.make_index_unique"