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# Create a Galaxy Tool XML for running NOMAD_NDIP.instr using a manual McStas source file.

galaxy_tool_xml = """<tool id="nomad_NDIP_mcstas" name="NOMAD NDIP Instrument" version="1.0.0">

    <description>Run McStas simulation using NOMAD_NDIP instrument</description>

    <creator>

        <person name="Fahima Islam"/>

        <organization url="https://www.ornl.gov/" name="ORNL"/>

    </creator>

    <requirements>

        <container type="docker">mccode/mcstas:latest</container>

    </requirements>

    <command detect_errors="exit_code"><![CDATA[

        ln -s $instrument_code /inputs/instrument.instr &&

        ln -s $spectrum_file /inputs/spectrum.dat &&

        mcstas -o NOMAD_NDIP instrument.instr &&

        ./NOMAD_NDIP.out \\

          --s3l=$s3l --s3r=$s3r --s3t=$s3t --s3b=$s3b \\

          --s4l=$s4l --s4r=$s4r --s4t=$s4t --s4b=$s4b \\

          --ncount=$ncount --dir=outputs &&

        (mv outputs/*.mcpl.gz $out_mcpl || true)

    ]]></command>

    <inputs>

        <param name="instrument_code" type="data" format="txt" label="Instrument Source (.instr)" optional="false"/>

        <param name="spectrum_file" type="data" format="txt" label="Source Spectrum (.dat)" optional="false"/>

        <param name="s3l" type="float" value="1.1" label="s3 left"/>

        <param name="s3r" type="float" value="1.1" label="s3 right"/>

        <param name="s3t" type="float" value="1.1" label="s3 top"/>

        <param name="s3b" type="float" value="1.1" label="s3 bottom"/>

        <param name="s4l" type="float" value="1.1" label="s4 left"/>

        <param name="s4r" type="float" value="1.1" label="s4 right"/>

        <param name="s4t" type="float" value="1.1" label="s4 top"/>

        <param name="s4b" type="float" value="1.1" label="s4 bottom"/>

        <param name="ncount" type="text" value="1e7" label="Number of particles"/>

    </inputs>

    <outputs>

        <data format="gz" name="out_mcpl" label="MCPL Output File"/>

    </outputs>

    <help><![CDATA[

        This tool runs a McStas simulation using the NOMAD_NDIP instrument.

        Required Inputs:

        - Instrument file (.instr)

        - Source spectrum file (.dat)

        You can control the slit parameters s3 and s4, as well as number of neutrons.

        Output:

        - MCPL file (if generated by instrument)

    ]]></help>

</tool>

"""