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Resolve "Refactor to use Python template"

Cage, Gregory requested to merge 53-refactor-with-python-template into main

Summary of Changes

Adds all the python template stuff. Did my best to address Ruff and MyPy errors.

Checklist

  • The MR has a clear and concise title
  • Code is self-documented and follows style guidelines.
  • Automated tests are written and pass successfully.
  • Regression tests (e.g. manually triggered system tests, manual GUI/tool tests, ...) are performed to make sure the MR does not break anything (when applicable)
  • Readme file is present and up-to-date.

Documentation Updates

Additional Notes

Closes #53 (closed)

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