diff --git a/HISTORY.rst b/HISTORY.rst
index acc9897054b931403a25b74a61fefe03cf9ac166..a743c427b32a4a1fd41a15651436ca4ab6d03edc 100644
--- a/HISTORY.rst
+++ b/HISTORY.rst
@@ -9,8 +9,21 @@ History
0.8.0.dev0
---------------------
-
-
+* Support new features in Galaxy job running/scripting so that Pulsar respects
+ ``$GALAXY_VIRTUAL_ENV`` and ``$PRESERVE_GALAXY_ENVIRONMENT``. Fix remote
+ metadata in cases where the tool environment changes the ``python`` on
+ ``$PATH``. `Pull Request 137`_
+* Precreate Galaxy tool outputs on the remote before executing (fixes a bug
+ related to missing output files on stage out). `Pull Request 141`_
+* Support the remote_transfer file action without setting the
+ ``jobs_directory`` destination param `Pull Request 136`_
+* Fix invalid character in job managers documentation (thanks to @mapa17).
+ `Pull Request 130`_
+* Fix ``conda_auto_*`` option resolution and include a sample
+ ``dependency_resolvers_conf.xml`` (thanks to @mapa17). `Pull Request 132`_
+* Fix tox/Travis tests. `Pull Request 138`_, `Pull Request 139`_,
+ `Pull Request 140`_
+* Fix a bug with AMQP acknowledgement. `Pull Request 143`_
---------------------
0.7.4 (2017-02-07)
@@ -148,6 +161,15 @@ History
.. github_links
+.. _Pull Request 143: https://github.com/galaxyproject/pulsar/pull/143
+.. _Pull Request 141: https://github.com/galaxyproject/pulsar/pull/141
+.. _Pull Request 136: https://github.com/galaxyproject/pulsar/pull/136
+.. _Pull Request 137: https://github.com/galaxyproject/pulsar/pull/137
+.. _Pull Request 140: https://github.com/galaxyproject/pulsar/pull/140
+.. _Pull Request 139: https://github.com/galaxyproject/pulsar/pull/139
+.. _Pull Request 138: https://github.com/galaxyproject/pulsar/pull/138
+.. _Pull Request 132: https://github.com/galaxyproject/pulsar/pull/132
+.. _Pull Request 130: https://github.com/galaxyproject/pulsar/pull/130
.. _11ce744: https://github.com/galaxyproject/pulsar/commit/11ce744
.. _3573341: https://github.com/galaxyproject/pulsar/commit/3573341
.. _93ab8a1: https://github.com/galaxyproject/pulsar/commit/93ab8a1
diff --git a/Makefile b/Makefile
index 26bc3790417d0dbee0516000de54897ba6f15cc7..1e8c3184a4a933d7381a92df7428e15c38e84f4c 100644
--- a/Makefile
+++ b/Makefile
@@ -122,7 +122,7 @@ open-project:
open $(PROJECT_URL) || xdg-open $(PROJECT_URL)
dist: clean
- $(IN_VENV) python setup.py sdist bdist_egg bdist_wheel
+ $(IN_VENV) python setup.py sdist bdist_wheel
ls -l dist
_release-test-artifacts:
@@ -133,7 +133,7 @@ dist-all: dist _dist-lib
release-test-artifacts: dist-all _release-test-artifacts
-_release-aritfacts:
+_release-artifacts:
@while [ -z "$$CONTINUE" ]; do \
read -r -p "Have you executed release-test and reviewed results? [y/N]: " CONTINUE; \
done ; \
@@ -141,7 +141,7 @@ _release-aritfacts:
@echo "Releasing"
$(IN_VENV) twine upload dist/*
-release-aritfacts: release-test-artifacts _release-aritfacts
+release-artifacts: release-test-artifacts _release-artifacts
commit-version:
$(IN_VENV) python $(BUILD_SCRIPTS_DIR)/commit_version.py $(SOURCE_DIR) $(VERSION)
@@ -149,7 +149,7 @@ commit-version:
new-version:
$(IN_VENV) python $(BUILD_SCRIPTS_DIR)/new_version.py $(SOURCE_DIR) $(VERSION)
-release-local: commit-version release-aritfacts new-version
+release-local: commit-version release-artifacts new-version
push-release:
git push $(UPSTREAM) master
@@ -161,10 +161,10 @@ add-history:
$(IN_VENV) python $(BUILD_SCRIPTS_DIR)/bootstrap_history.py $(ITEM)
_dist-lib:
- $(IN_VENV) PULSAR_GALAXY_LIB=1 python setup.py sdist bdist_egg bdist_wheel
+ $(IN_VENV) PULSAR_GALAXY_LIB=1 python setup.py sdist bdist_wheel
ls -l dist
dist-lib: clean _dist-lib
#release-test-lib-artifacts: dist-lib _release-test-artifacts
-#release-lib-aritfacts: release-test-lib-artifacts _release-aritfacts
+#release-lib-artifacts: release-test-lib-artifacts _release-artifacts
diff --git a/docs/developing.rst b/docs/developing.rst
index e812327b9305bcf3ecc980c3ea50ffd6c8cd7d2e..9ddf5263d767385ac955ad1425f7eea84b083a9f 100644
--- a/docs/developing.rst
+++ b/docs/developing.rst
@@ -33,12 +33,19 @@ are fine.
* Review ``git status`` for missing files.
* Verify the latest Travis CI builds pass.
* ``make open-docs`` and review changelog.
+* Ensure the target release is set correctly in ``pulsar/__init__.py``
+ (``version`` will be a ``devN`` variant of target release).
* ``make clean && make lint && make tests``
-* ``python tools/commit_version.py <new_version>``
* ``make release``
- * Review `Test PyPI site <https://testpypi.python.org/pypi/pulsar-app>`_
- for errors.
- * Test intall ``pip install -i https://testpypi.python.org/pypi pulsar-app``.
-* ``python tools/new_version.py <new_version>``
-* ``git push origin master``
-* ``git push --tags origin``
+
+ * Review `Test PyPI site <https://testpypi.python.org/pypi/pulsar-app>`_
+ for errors.
+ * Test intall ``pip install -i https://testpypi.python.org/pypi pulsar-app``.
+
+ This process will push packages to test PyPI, allow review, publish
+ to production PyPI, tag the git repository, and push the tag upstream.
+ If changes are needed, this can be broken down into steps
+ such as:
+
+ * ``make release-local``
+ * ``make push-release``
diff --git a/docs/pulsar.cache.rst b/docs/pulsar.cache.rst
index ccfe4b0576e77aed4fa1dc6d26b9ecf706f7e166..f729d5f47cb171e583eb6b1df31b825949816e65 100644
--- a/docs/pulsar.cache.rst
+++ b/docs/pulsar.cache.rst
@@ -1,19 +1,19 @@
-pulsar.cache package
-====================
+pulsar\.cache package
+=====================
Submodules
----------
-pulsar.cache.persistence module
--------------------------------
+pulsar\.cache\.persistence module
+---------------------------------
.. automodule:: pulsar.cache.persistence
:members:
:undoc-members:
:show-inheritance:
-pulsar.cache.util module
-------------------------
+pulsar\.cache\.util module
+--------------------------
.. automodule:: pulsar.cache.util
:members:
diff --git a/docs/pulsar.client.rst b/docs/pulsar.client.rst
index 6fa8e958aa32e0b194f38c96bd9d9d9efeba6348..01fc75ee248b8a4cf2a58874b02f4b841d84f634 100644
--- a/docs/pulsar.client.rst
+++ b/docs/pulsar.client.rst
@@ -1,5 +1,5 @@
-pulsar.client package
-=====================
+pulsar\.client package
+======================
Subpackages
-----------
@@ -13,112 +13,120 @@ Subpackages
Submodules
----------
-pulsar.client.action_mapper module
-----------------------------------
+pulsar\.client\.action\_mapper module
+-------------------------------------
.. automodule:: pulsar.client.action_mapper
:members:
:undoc-members:
:show-inheritance:
-pulsar.client.amqp_exchange module
-----------------------------------
+pulsar\.client\.amqp\_exchange module
+-------------------------------------
.. automodule:: pulsar.client.amqp_exchange
:members:
:undoc-members:
:show-inheritance:
-pulsar.client.amqp_exchange_factory module
-------------------------------------------
+pulsar\.client\.amqp\_exchange\_factory module
+----------------------------------------------
.. automodule:: pulsar.client.amqp_exchange_factory
:members:
:undoc-members:
:show-inheritance:
-pulsar.client.client module
----------------------------
+pulsar\.client\.client module
+-----------------------------
.. automodule:: pulsar.client.client
:members:
:undoc-members:
:show-inheritance:
-pulsar.client.config_util module
---------------------------------
+pulsar\.client\.config\_util module
+-----------------------------------
.. automodule:: pulsar.client.config_util
:members:
:undoc-members:
:show-inheritance:
-pulsar.client.decorators module
--------------------------------
+pulsar\.client\.decorators module
+---------------------------------
.. automodule:: pulsar.client.decorators
:members:
:undoc-members:
:show-inheritance:
-pulsar.client.destination module
---------------------------------
+pulsar\.client\.destination module
+----------------------------------
.. automodule:: pulsar.client.destination
:members:
:undoc-members:
:show-inheritance:
-pulsar.client.interface module
-------------------------------
+pulsar\.client\.exceptions module
+---------------------------------
+
+.. automodule:: pulsar.client.exceptions
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
+pulsar\.client\.interface module
+--------------------------------
.. automodule:: pulsar.client.interface
:members:
:undoc-members:
:show-inheritance:
-pulsar.client.job_directory module
-----------------------------------
+pulsar\.client\.job\_directory module
+-------------------------------------
.. automodule:: pulsar.client.job_directory
:members:
:undoc-members:
:show-inheritance:
-pulsar.client.manager module
-----------------------------
+pulsar\.client\.manager module
+------------------------------
.. automodule:: pulsar.client.manager
:members:
:undoc-members:
:show-inheritance:
-pulsar.client.object_client module
-----------------------------------
+pulsar\.client\.object\_client module
+-------------------------------------
.. automodule:: pulsar.client.object_client
:members:
:undoc-members:
:show-inheritance:
-pulsar.client.path_mapper module
---------------------------------
+pulsar\.client\.path\_mapper module
+-----------------------------------
.. automodule:: pulsar.client.path_mapper
:members:
:undoc-members:
:show-inheritance:
-pulsar.client.setup_handler module
-----------------------------------
+pulsar\.client\.setup\_handler module
+-------------------------------------
.. automodule:: pulsar.client.setup_handler
:members:
:undoc-members:
:show-inheritance:
-pulsar.client.util module
--------------------------
+pulsar\.client\.util module
+---------------------------
.. automodule:: pulsar.client.util
:members:
diff --git a/docs/pulsar.client.staging.rst b/docs/pulsar.client.staging.rst
index 98dc2c4cd44ec369b1b53fc0a1ed4f1c72df9711..d8ca98108d3afc2c13347ae2da97c297a547b7f5 100644
--- a/docs/pulsar.client.staging.rst
+++ b/docs/pulsar.client.staging.rst
@@ -1,19 +1,19 @@
-pulsar.client.staging package
-=============================
+pulsar\.client\.staging package
+===============================
Submodules
----------
-pulsar.client.staging.down module
----------------------------------
+pulsar\.client\.staging\.down module
+------------------------------------
.. automodule:: pulsar.client.staging.down
:members:
:undoc-members:
:show-inheritance:
-pulsar.client.staging.up module
--------------------------------
+pulsar\.client\.staging\.up module
+----------------------------------
.. automodule:: pulsar.client.staging.up
:members:
diff --git a/docs/pulsar.client.test.rst b/docs/pulsar.client.test.rst
index a28c7990f0bb6dd02c63d204f7952e8d25d1b2b3..79b013c515fd5fdd0ff7e7330fd6c4b7cc62ebcc 100644
--- a/docs/pulsar.client.test.rst
+++ b/docs/pulsar.client.test.rst
@@ -1,19 +1,19 @@
-pulsar.client.test package
-==========================
+pulsar\.client\.test package
+============================
Submodules
----------
-pulsar.client.test.check module
--------------------------------
+pulsar\.client\.test\.check module
+----------------------------------
.. automodule:: pulsar.client.test.check
:members:
:undoc-members:
:show-inheritance:
-pulsar.client.test.test_common module
--------------------------------------
+pulsar\.client\.test\.test\_common module
+-----------------------------------------
.. automodule:: pulsar.client.test.test_common
:members:
diff --git a/docs/pulsar.client.transport.rst b/docs/pulsar.client.transport.rst
index c637585aa5edd8e6e6ca5e8954a3b7d83e1d3f60..c727d63650bbebc0744c7036b5a0160ebc052982 100644
--- a/docs/pulsar.client.transport.rst
+++ b/docs/pulsar.client.transport.rst
@@ -1,43 +1,43 @@
-pulsar.client.transport package
-===============================
+pulsar\.client\.transport package
+=================================
Submodules
----------
-pulsar.client.transport.curl module
------------------------------------
+pulsar\.client\.transport\.curl module
+--------------------------------------
.. automodule:: pulsar.client.transport.curl
:members:
:undoc-members:
:show-inheritance:
-pulsar.client.transport.poster module
--------------------------------------
+pulsar\.client\.transport\.poster module
+----------------------------------------
.. automodule:: pulsar.client.transport.poster
:members:
:undoc-members:
:show-inheritance:
-pulsar.client.transport.requests module
----------------------------------------
+pulsar\.client\.transport\.requests module
+------------------------------------------
.. automodule:: pulsar.client.transport.requests
:members:
:undoc-members:
:show-inheritance:
-pulsar.client.transport.ssh module
-----------------------------------
+pulsar\.client\.transport\.ssh module
+-------------------------------------
.. automodule:: pulsar.client.transport.ssh
:members:
:undoc-members:
:show-inheritance:
-pulsar.client.transport.standard module
----------------------------------------
+pulsar\.client\.transport\.standard module
+------------------------------------------
.. automodule:: pulsar.client.transport.standard
:members:
diff --git a/docs/pulsar.managers.base.rst b/docs/pulsar.managers.base.rst
index 80da3cbadc80e001133aa9b72b90d2bebc7db0a8..c700e9f2ec16924efcea6989933a10e8c525e4ab 100644
--- a/docs/pulsar.managers.base.rst
+++ b/docs/pulsar.managers.base.rst
@@ -1,27 +1,27 @@
-pulsar.managers.base package
-============================
+pulsar\.managers\.base package
+==============================
Submodules
----------
-pulsar.managers.base.base_drmaa module
---------------------------------------
+pulsar\.managers\.base\.base\_drmaa module
+------------------------------------------
.. automodule:: pulsar.managers.base.base_drmaa
:members:
:undoc-members:
:show-inheritance:
-pulsar.managers.base.directory module
--------------------------------------
+pulsar\.managers\.base\.directory module
+----------------------------------------
.. automodule:: pulsar.managers.base.directory
:members:
:undoc-members:
:show-inheritance:
-pulsar.managers.base.external module
-------------------------------------
+pulsar\.managers\.base\.external module
+---------------------------------------
.. automodule:: pulsar.managers.base.external
:members:
diff --git a/docs/pulsar.managers.rst b/docs/pulsar.managers.rst
index 3b204506a085c7f345512f3631b215c21818b3b5..ff4e9581e3eade4441c53ca52a8a6c1c809e802a 100644
--- a/docs/pulsar.managers.rst
+++ b/docs/pulsar.managers.rst
@@ -1,5 +1,5 @@
-pulsar.managers package
-=======================
+pulsar\.managers package
+========================
Subpackages
-----------
@@ -13,80 +13,80 @@ Subpackages
Submodules
----------
-pulsar.managers.queued module
------------------------------
+pulsar\.managers\.queued module
+-------------------------------
.. automodule:: pulsar.managers.queued
:members:
:undoc-members:
:show-inheritance:
-pulsar.managers.queued_cli module
----------------------------------
+pulsar\.managers\.queued\_cli module
+------------------------------------
.. automodule:: pulsar.managers.queued_cli
:members:
:undoc-members:
:show-inheritance:
-pulsar.managers.queued_condor module
-------------------------------------
+pulsar\.managers\.queued\_condor module
+---------------------------------------
.. automodule:: pulsar.managers.queued_condor
:members:
:undoc-members:
:show-inheritance:
-pulsar.managers.queued_drmaa module
------------------------------------
+pulsar\.managers\.queued\_drmaa module
+--------------------------------------
.. automodule:: pulsar.managers.queued_drmaa
:members:
:undoc-members:
:show-inheritance:
-pulsar.managers.queued_drmaa_xsede module
------------------------------------------
+pulsar\.managers\.queued\_drmaa\_xsede module
+---------------------------------------------
.. automodule:: pulsar.managers.queued_drmaa_xsede
:members:
:undoc-members:
:show-inheritance:
-pulsar.managers.queued_external_drmaa module
---------------------------------------------
+pulsar\.managers\.queued\_external\_drmaa module
+------------------------------------------------
.. automodule:: pulsar.managers.queued_external_drmaa
:members:
:undoc-members:
:show-inheritance:
-pulsar.managers.queued_pbs module
----------------------------------
+pulsar\.managers\.queued\_pbs module
+------------------------------------
.. automodule:: pulsar.managers.queued_pbs
:members:
:undoc-members:
:show-inheritance:
-pulsar.managers.stateful module
--------------------------------
+pulsar\.managers\.stateful module
+---------------------------------
.. automodule:: pulsar.managers.stateful
:members:
:undoc-members:
:show-inheritance:
-pulsar.managers.status module
------------------------------
+pulsar\.managers\.status module
+-------------------------------
.. automodule:: pulsar.managers.status
:members:
:undoc-members:
:show-inheritance:
-pulsar.managers.unqueued module
--------------------------------
+pulsar\.managers\.unqueued module
+---------------------------------
.. automodule:: pulsar.managers.unqueued
:members:
diff --git a/docs/pulsar.managers.staging.rst b/docs/pulsar.managers.staging.rst
index 0f14f5af3b7723ee03e46e10a8fa277cede6e1de..8931c67d126d7ce359f67723dbb026187809f007 100644
--- a/docs/pulsar.managers.staging.rst
+++ b/docs/pulsar.managers.staging.rst
@@ -1,19 +1,19 @@
-pulsar.managers.staging package
-===============================
+pulsar\.managers\.staging package
+=================================
Submodules
----------
-pulsar.managers.staging.post module
------------------------------------
+pulsar\.managers\.staging\.post module
+--------------------------------------
.. automodule:: pulsar.managers.staging.post
:members:
:undoc-members:
:show-inheritance:
-pulsar.managers.staging.pre module
-----------------------------------
+pulsar\.managers\.staging\.pre module
+-------------------------------------
.. automodule:: pulsar.managers.staging.pre
:members:
diff --git a/docs/pulsar.managers.util.cli.job.rst b/docs/pulsar.managers.util.cli.job.rst
index 51ff14d7ee97e911eed68e3e58cd2381fa907bac..cad20090a88363234df486b8a5762b74dae7dadd 100644
--- a/docs/pulsar.managers.util.cli.job.rst
+++ b/docs/pulsar.managers.util.cli.job.rst
@@ -1,27 +1,27 @@
-pulsar.managers.util.cli.job package
-====================================
+pulsar\.managers\.util\.cli\.job package
+========================================
Submodules
----------
-pulsar.managers.util.cli.job.slurm module
------------------------------------------
+pulsar\.managers\.util\.cli\.job\.slurm module
+----------------------------------------------
.. automodule:: pulsar.managers.util.cli.job.slurm
:members:
:undoc-members:
:show-inheritance:
-pulsar.managers.util.cli.job.slurm_torque module
-------------------------------------------------
+pulsar\.managers\.util\.cli\.job\.slurm\_torque module
+------------------------------------------------------
.. automodule:: pulsar.managers.util.cli.job.slurm_torque
:members:
:undoc-members:
:show-inheritance:
-pulsar.managers.util.cli.job.torque module
-------------------------------------------
+pulsar\.managers\.util\.cli\.job\.torque module
+-----------------------------------------------
.. automodule:: pulsar.managers.util.cli.job.torque
:members:
diff --git a/docs/pulsar.managers.util.cli.rst b/docs/pulsar.managers.util.cli.rst
index 39130e8df86bc723e0b91b5bd7be1c7633843b57..b5b2b6bb8228e00863d5d6bb8f47d6dac061984e 100644
--- a/docs/pulsar.managers.util.cli.rst
+++ b/docs/pulsar.managers.util.cli.rst
@@ -1,5 +1,5 @@
-pulsar.managers.util.cli package
-================================
+pulsar\.managers\.util\.cli package
+===================================
Subpackages
-----------
@@ -12,8 +12,8 @@ Subpackages
Submodules
----------
-pulsar.managers.util.cli.factory module
----------------------------------------
+pulsar\.managers\.util\.cli\.factory module
+-------------------------------------------
.. automodule:: pulsar.managers.util.cli.factory
:members:
diff --git a/docs/pulsar.managers.util.cli.shell.rst b/docs/pulsar.managers.util.cli.shell.rst
index c9a387229c743d0c4e3ba141e444b717612aa398..7be4bb9a5de71f997a8a86fb464515afa650787b 100644
--- a/docs/pulsar.managers.util.cli.shell.rst
+++ b/docs/pulsar.managers.util.cli.shell.rst
@@ -1,19 +1,19 @@
-pulsar.managers.util.cli.shell package
-======================================
+pulsar\.managers\.util\.cli\.shell package
+==========================================
Submodules
----------
-pulsar.managers.util.cli.shell.local module
--------------------------------------------
+pulsar\.managers\.util\.cli\.shell\.local module
+------------------------------------------------
.. automodule:: pulsar.managers.util.cli.shell.local
:members:
:undoc-members:
:show-inheritance:
-pulsar.managers.util.cli.shell.rsh module
------------------------------------------
+pulsar\.managers\.util\.cli\.shell\.rsh module
+----------------------------------------------
.. automodule:: pulsar.managers.util.cli.shell.rsh
:members:
diff --git a/docs/pulsar.managers.util.condor.rst b/docs/pulsar.managers.util.condor.rst
index c99f10c7c65c837710de4b325b1ee12f44563a0e..e3af0bc7b78218abb6662d98d0e481d2f293ff46 100644
--- a/docs/pulsar.managers.util.condor.rst
+++ b/docs/pulsar.managers.util.condor.rst
@@ -1,5 +1,5 @@
-pulsar.managers.util.condor package
-===================================
+pulsar\.managers\.util\.condor package
+======================================
Module contents
---------------
diff --git a/docs/pulsar.managers.util.drmaa.rst b/docs/pulsar.managers.util.drmaa.rst
index 3ac16f8875e4ecb7cd63f14f009a2e93833c250a..e4c7ecfd24a098d90b62d172200476f7ba19cc52 100644
--- a/docs/pulsar.managers.util.drmaa.rst
+++ b/docs/pulsar.managers.util.drmaa.rst
@@ -1,5 +1,5 @@
-pulsar.managers.util.drmaa package
-==================================
+pulsar\.managers\.util\.drmaa package
+=====================================
Module contents
---------------
diff --git a/docs/pulsar.managers.util.job_script.rst b/docs/pulsar.managers.util.job_script.rst
index 8bd69539329c4f832b959b38ca5263064a58afce..913a1fda32d1bf1d64a4ea082bf69ec1180795e6 100644
--- a/docs/pulsar.managers.util.job_script.rst
+++ b/docs/pulsar.managers.util.job_script.rst
@@ -1,5 +1,5 @@
-pulsar.managers.util.job_script package
-=======================================
+pulsar\.managers\.util\.job\_script package
+===========================================
Module contents
---------------
diff --git a/docs/pulsar.managers.util.rst b/docs/pulsar.managers.util.rst
index d970ed3df1818e5b498f78956e6e29b13db4f902..1893800c9c8a44588c2bcb44ef230fc3323dba24 100644
--- a/docs/pulsar.managers.util.rst
+++ b/docs/pulsar.managers.util.rst
@@ -1,5 +1,5 @@
-pulsar.managers.util package
-============================
+pulsar\.managers\.util package
+==============================
Subpackages
-----------
@@ -14,40 +14,40 @@ Subpackages
Submodules
----------
-pulsar.managers.util.env module
--------------------------------
+pulsar\.managers\.util\.env module
+----------------------------------
.. automodule:: pulsar.managers.util.env
:members:
:undoc-members:
:show-inheritance:
-pulsar.managers.util.external module
-------------------------------------
+pulsar\.managers\.util\.external module
+---------------------------------------
.. automodule:: pulsar.managers.util.external
:members:
:undoc-members:
:show-inheritance:
-pulsar.managers.util.kill module
---------------------------------
+pulsar\.managers\.util\.kill module
+-----------------------------------
.. automodule:: pulsar.managers.util.kill
:members:
:undoc-members:
:show-inheritance:
-pulsar.managers.util.retry module
----------------------------------
+pulsar\.managers\.util\.retry module
+------------------------------------
.. automodule:: pulsar.managers.util.retry
:members:
:undoc-members:
:show-inheritance:
-pulsar.managers.util.sudo module
---------------------------------
+pulsar\.managers\.util\.sudo module
+-----------------------------------
.. automodule:: pulsar.managers.util.sudo
:members:
diff --git a/docs/pulsar.mesos.rst b/docs/pulsar.mesos.rst
index 9ffefb4ff4968dfb3bc0332ef67bb7126bb93e78..62e88a06bebeb6eed479bc45b1d04fff37a82a64 100644
--- a/docs/pulsar.mesos.rst
+++ b/docs/pulsar.mesos.rst
@@ -1,11 +1,11 @@
-pulsar.mesos package
-====================
+pulsar\.mesos package
+=====================
Submodules
----------
-pulsar.mesos.framework module
------------------------------
+pulsar\.mesos\.framework module
+-------------------------------
.. automodule:: pulsar.mesos.framework
:members:
diff --git a/docs/pulsar.messaging.rst b/docs/pulsar.messaging.rst
index aeec6f66077f70cd8c6d8905e15a6a5231909d4d..7f164d3502b273b3015d63a94e09833558fa73b3 100644
--- a/docs/pulsar.messaging.rst
+++ b/docs/pulsar.messaging.rst
@@ -1,11 +1,11 @@
-pulsar.messaging package
-========================
+pulsar\.messaging package
+=========================
Submodules
----------
-pulsar.messaging.bind_amqp module
----------------------------------
+pulsar\.messaging\.bind\_amqp module
+------------------------------------
.. automodule:: pulsar.messaging.bind_amqp
:members:
diff --git a/docs/pulsar.rst b/docs/pulsar.rst
index b6f8483100950395991de5583f601aa6cfe5c416..4f5d6d84d9bf464f9e6dbe4f7f07b245a94e0c24 100644
--- a/docs/pulsar.rst
+++ b/docs/pulsar.rst
@@ -19,40 +19,40 @@ Subpackages
Submodules
----------
-pulsar.core module
-------------------
+pulsar\.core module
+-------------------
.. automodule:: pulsar.core
:members:
:undoc-members:
:show-inheritance:
-pulsar.locks module
--------------------
+pulsar\.locks module
+--------------------
.. automodule:: pulsar.locks
:members:
:undoc-members:
:show-inheritance:
-pulsar.main module
-------------------
+pulsar\.main module
+-------------------
.. automodule:: pulsar.main
:members:
:undoc-members:
:show-inheritance:
-pulsar.manager_endpoint_util module
------------------------------------
+pulsar\.manager\_endpoint\_util module
+--------------------------------------
.. automodule:: pulsar.manager_endpoint_util
:members:
:undoc-members:
:show-inheritance:
-pulsar.manager_factory module
------------------------------
+pulsar\.manager\_factory module
+-------------------------------
.. automodule:: pulsar.manager_factory
:members:
diff --git a/docs/pulsar.scripts.rst b/docs/pulsar.scripts.rst
index 865f6d4475f70b9dd18c3f2ea4b8d931b4738ac7..0507d96fc72ac812829f9cf8cc83348f0d8d1e1e 100644
--- a/docs/pulsar.scripts.rst
+++ b/docs/pulsar.scripts.rst
@@ -1,75 +1,75 @@
-pulsar.scripts package
-======================
+pulsar\.scripts package
+=======================
Submodules
----------
-pulsar.scripts.chown_working_directory module
----------------------------------------------
+pulsar\.scripts\.chown\_working\_directory module
+-------------------------------------------------
.. automodule:: pulsar.scripts.chown_working_directory
:members:
:undoc-members:
:show-inheritance:
-pulsar.scripts.config module
-----------------------------
+pulsar\.scripts\.config module
+------------------------------
.. automodule:: pulsar.scripts.config
:members:
:undoc-members:
:show-inheritance:
-pulsar.scripts.drmaa_kill module
---------------------------------
+pulsar\.scripts\.drmaa\_kill module
+-----------------------------------
.. automodule:: pulsar.scripts.drmaa_kill
:members:
:undoc-members:
:show-inheritance:
-pulsar.scripts.drmaa_launch module
-----------------------------------
+pulsar\.scripts\.drmaa\_launch module
+-------------------------------------
.. automodule:: pulsar.scripts.drmaa_launch
:members:
:undoc-members:
:show-inheritance:
-pulsar.scripts.mesos_executor module
-------------------------------------
+pulsar\.scripts\.mesos\_executor module
+---------------------------------------
.. automodule:: pulsar.scripts.mesos_executor
:members:
:undoc-members:
:show-inheritance:
-pulsar.scripts.mesos_framework module
--------------------------------------
+pulsar\.scripts\.mesos\_framework module
+----------------------------------------
.. automodule:: pulsar.scripts.mesos_framework
:members:
:undoc-members:
:show-inheritance:
-pulsar.scripts.run module
--------------------------
+pulsar\.scripts\.run module
+---------------------------
.. automodule:: pulsar.scripts.run
:members:
:undoc-members:
:show-inheritance:
-pulsar.scripts.submit module
-----------------------------
+pulsar\.scripts\.submit module
+------------------------------
.. automodule:: pulsar.scripts.submit
:members:
:undoc-members:
:show-inheritance:
-pulsar.scripts.submit_util module
----------------------------------
+pulsar\.scripts\.submit\_util module
+------------------------------------
.. automodule:: pulsar.scripts.submit_util
:members:
diff --git a/docs/pulsar.tools.rst b/docs/pulsar.tools.rst
index ee94cca8fd38ebf7981673739b1a27843e0de9db..a514adb4ea4dbba8d7ed8c3e3f5a0560dbbc88b7 100644
--- a/docs/pulsar.tools.rst
+++ b/docs/pulsar.tools.rst
@@ -1,27 +1,27 @@
-pulsar.tools package
-====================
+pulsar\.tools package
+=====================
Submodules
----------
-pulsar.tools.authorization module
----------------------------------
+pulsar\.tools\.authorization module
+-----------------------------------
.. automodule:: pulsar.tools.authorization
:members:
:undoc-members:
:show-inheritance:
-pulsar.tools.toolbox module
----------------------------
+pulsar\.tools\.toolbox module
+-----------------------------
.. automodule:: pulsar.tools.toolbox
:members:
:undoc-members:
:show-inheritance:
-pulsar.tools.validator module
------------------------------
+pulsar\.tools\.validator module
+-------------------------------
.. automodule:: pulsar.tools.validator
:members:
diff --git a/docs/pulsar.util.pastescript.rst b/docs/pulsar.util.pastescript.rst
new file mode 100644
index 0000000000000000000000000000000000000000..c12b6c1ca8b1a88a3f5391b9660693a17bc1a14f
--- /dev/null
+++ b/docs/pulsar.util.pastescript.rst
@@ -0,0 +1,30 @@
+pulsar\.util\.pastescript package
+=================================
+
+Submodules
+----------
+
+pulsar\.util\.pastescript\.loadwsgi module
+------------------------------------------
+
+.. automodule:: pulsar.util.pastescript.loadwsgi
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
+pulsar\.util\.pastescript\.serve module
+---------------------------------------
+
+.. automodule:: pulsar.util.pastescript.serve
+ :members:
+ :undoc-members:
+ :show-inheritance:
+
+
+Module contents
+---------------
+
+.. automodule:: pulsar.util.pastescript
+ :members:
+ :undoc-members:
+ :show-inheritance:
diff --git a/docs/pulsar.util.rst b/docs/pulsar.util.rst
index 6134680b5bb8a8f999995ba416c006cd2111998f..739df1542f1d837acdf10a9c5bb2e02dd6fefef7 100644
--- a/docs/pulsar.util.rst
+++ b/docs/pulsar.util.rst
@@ -1,5 +1,12 @@
-pulsar.util package
-===================
+pulsar\.util package
+====================
+
+Subpackages
+-----------
+
+.. toctree::
+
+ pulsar.util.pastescript
Module contents
---------------
diff --git a/docs/pulsar.web.rst b/docs/pulsar.web.rst
index 1cd31da7b6bd01477c889704060219275186d0a8..a78cde9fd22690083128c944002eed000a69d5c2 100644
--- a/docs/pulsar.web.rst
+++ b/docs/pulsar.web.rst
@@ -1,27 +1,27 @@
-pulsar.web package
-==================
+pulsar\.web package
+===================
Submodules
----------
-pulsar.web.framework module
----------------------------
+pulsar\.web\.framework module
+-----------------------------
.. automodule:: pulsar.web.framework
:members:
:undoc-members:
:show-inheritance:
-pulsar.web.routes module
-------------------------
+pulsar\.web\.routes module
+--------------------------
.. automodule:: pulsar.web.routes
:members:
:undoc-members:
:show-inheritance:
-pulsar.web.wsgi module
-----------------------
+pulsar\.web\.wsgi module
+------------------------
.. automodule:: pulsar.web.wsgi
:members: