diff --git a/update_galaxy_utils.sh b/update_galaxy_utils.sh index d0efabde6954d5a8f153816d0ff0a72d5d287a62..53723cd8c81fd61d379fc4e5e45b47b644e58fcd 100755 --- a/update_galaxy_utils.sh +++ b/update_galaxy_utils.sh @@ -51,6 +51,13 @@ then rm -rf $GALAXY_LIB_DIR/jobs/metrics cp -r $PULSAR_DIRECTORY/galaxy/jobs/metrics $GALAXY_LIB_DIR/jobs + rm -rf $GALAXY_LIB_DIR/tools/linters + cp -r $PULSAR_DIRECTORY/galaxy/tools/linters $GALAXY_LIB_DIR/tools + + cp $PULSAR_DIRECTORY/galaxy/tools/lint.py $GALAXY_LIB_DIR/tools/lint.py + cp $PULSAR_DIRECTORY/galaxy/tools/loader.py $GALAXY_LIB_DIR/tools/loader.py + cp $PULSAR_DIRECTORY/galaxy/tools/loader_directory.py $GALAXY_LIB_DIR/tools/loader_directory.py + cp $PULSAR_DIRECTORY/galaxy/util/plugin_config.py $GALAXY_LIB_DIR/util else @@ -66,6 +73,12 @@ else rm -rf $PULSAR_DIRECTORY/galaxy/jobs/metrics cp -r $GALAXY_LIB_DIR/jobs/metrics $PULSAR_DIRECTORY/galaxy/jobs + rm -rf $PULSAR_DIRECTORY/galaxy/tools/linters + cp -r $GALAXY_LIB_DIR/tools/linters $PULSAR_DIRECTORY/galaxy/tools + + cp $GALAXY_LIB_DIR/tools/lint.py $PULSAR_DIRECTORY/galaxy/tools + cp $GALAXY_LIB_DIR/tools/loader.py $PULSAR_DIRECTORY/galaxy/tools + cp $GALAXY_LIB_DIR/tools/loader_directory.py $PULSAR_DIRECTORY/galaxy/tools cp $GALAXY_LIB_DIR/util/plugin_config.py $PULSAR_DIRECTORY/galaxy/util/ fi