From 38201cc2392fcce117d165886a48f94d404f9fcd Mon Sep 17 00:00:00 2001
From: John Chilton <jmchilton@gmail.com>
Date: Tue, 6 Sep 2016 12:29:46 -0400
Subject: [PATCH] Allow setting GALAXY_ROOT when running test_install.bash.
---
install_test/test_install.bash | 10 +++++++---
1 file changed, 7 insertions(+), 3 deletions(-)
diff --git a/install_test/test_install.bash b/install_test/test_install.bash
index 3e95ba04..98b7508e 100755
--- a/install_test/test_install.bash
+++ b/install_test/test_install.bash
@@ -4,8 +4,6 @@ set -e
shopt -s nullglob
PULSAR_INSTALL_TARGET="${PULSAR_INSTALL_TARGET:-pulsar-app}"
-
-#PULSAR_INSTALL_TARGET=`echo $PULSAR_INSTALL_TARGET` # Expand wildcards
PLANEMO_INSTALL_TARGET="${PLANEMO_INSTALL_TARGET:-planemo==0.29.1}"
echo "Begin Pulsar checks"
@@ -54,7 +52,13 @@ pip install "$PLANEMO_INSTALL_TARGET"
echo "Setting up Planemo test tools."
planemo project_init --template=demo test_tools
echo "Running tool tests with Planemo through Pulsar"
-planemo --verbose test --job_config_file "$SCRIPT_DIR/galaxy_job_conf.xml" test_tools/cat.xml
+: ${GALAXY_ROOT:=""}
+galaxy_root_args=""
+if [ -d "$GALAXY_ROOT" ];
+then
+ galaxy_root_args="--galaxy_root $GALAXY_ROOT"
+fi
+planemo --verbose test $galaxy_root_args --job_config_file "$SCRIPT_DIR/galaxy_job_conf.xml" test_tools/cat.xml
echo "Tests complete."
cd pulsar
--
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